Results 1 - 20 of 24 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
10595 | 5' | -55.7 | NC_002687.1 | + | 331834 | 1.08 | 0.008348 |
Target: 5'- gCUCGACGAGUCCGCGCACGUUGCUCAu -3' miRNA: 3'- -GAGCUGCUCAGGCGCGUGCAACGAGU- -5' |
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10595 | 5' | -55.7 | NC_002687.1 | + | 331986 | 0.76 | 0.608651 |
Target: 5'- aUCGAUGAuugGUCCGUGguCGUUGUUCAu -3' miRNA: 3'- gAGCUGCU---CAGGCGCguGCAACGAGU- -5' |
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10595 | 5' | -55.7 | NC_002687.1 | + | 276134 | 0.75 | 0.647413 |
Target: 5'- gUCGAUGAGcCUGCGCAUGacccUGCUCGa -3' miRNA: 3'- gAGCUGCUCaGGCGCGUGCa---ACGAGU- -5' |
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10595 | 5' | -55.7 | NC_002687.1 | + | 295322 | 0.73 | 0.778574 |
Target: 5'- -gCGuGCGAGUCCGCcuacagGCagGCGUUGCUCGa -3' miRNA: 3'- gaGC-UGCUCAGGCG------CG--UGCAACGAGU- -5' |
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10595 | 5' | -55.7 | NC_002687.1 | + | 277152 | 0.71 | 0.852107 |
Target: 5'- -cCGACGAGgcaGCGCGCGggGCUUu -3' miRNA: 3'- gaGCUGCUCaggCGCGUGCaaCGAGu -5' |
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10595 | 5' | -55.7 | NC_002687.1 | + | 302608 | 0.7 | 0.89959 |
Target: 5'- gUUGGgGAGaUCCGCGCAUcucUGCUCAa -3' miRNA: 3'- gAGCUgCUC-AGGCGCGUGca-ACGAGU- -5' |
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10595 | 5' | -55.7 | NC_002687.1 | + | 71458 | 0.68 | 0.953649 |
Target: 5'- -aCGACGAGUgCCGCuaGCACGacggcGCUUAg -3' miRNA: 3'- gaGCUGCUCA-GGCG--CGUGCaa---CGAGU- -5' |
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10595 | 5' | -55.7 | NC_002687.1 | + | 10250 | 0.68 | 0.957299 |
Target: 5'- cCUCGAaaaGAGUCCGUGuCugGgcGC-CAg -3' miRNA: 3'- -GAGCUg--CUCAGGCGC-GugCaaCGaGU- -5' |
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10595 | 5' | -55.7 | NC_002687.1 | + | 166865 | 0.68 | 0.960748 |
Target: 5'- cCUCGAUcGGUCUGCGUACGUcGUg-- -3' miRNA: 3'- -GAGCUGcUCAGGCGCGUGCAaCGagu -5' |
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10595 | 5' | -55.7 | NC_002687.1 | + | 200121 | 0.67 | 0.967058 |
Target: 5'- -gCGACGAcggCCGCGCGcCGUUgacgaGCUCGu -3' miRNA: 3'- gaGCUGCUca-GGCGCGU-GCAA-----CGAGU- -5' |
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10595 | 5' | -55.7 | NC_002687.1 | + | 200238 | 0.67 | 0.977234 |
Target: 5'- -cCGACGA--CCGCGCggcucuuGCGgUGCUCAa -3' miRNA: 3'- gaGCUGCUcaGGCGCG-------UGCaACGAGU- -5' |
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10595 | 5' | -55.7 | NC_002687.1 | + | 145784 | 0.67 | 0.977234 |
Target: 5'- cCUCGGCGAuggCCGCcucggacauggacGCGCGccUGCUCGu -3' miRNA: 3'- -GAGCUGCUca-GGCG-------------CGUGCa-ACGAGU- -5' |
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10595 | 5' | -55.7 | NC_002687.1 | + | 300811 | 0.66 | 0.985214 |
Target: 5'- aCUCGAUGAaagcUUCGUGCGCuuuGUUGCUUg -3' miRNA: 3'- -GAGCUGCUc---AGGCGCGUG---CAACGAGu -5' |
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10595 | 5' | -55.7 | NC_002687.1 | + | 50011 | 0.66 | 0.983501 |
Target: 5'- -gCGACGaAGUgaGCGC-CGUgGCUCAa -3' miRNA: 3'- gaGCUGC-UCAggCGCGuGCAaCGAGU- -5' |
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10595 | 5' | -55.7 | NC_002687.1 | + | 50897 | 0.66 | 0.983501 |
Target: 5'- -gCGACGaAGUgaGCGC-CGUgGCUCAa -3' miRNA: 3'- gaGCUGC-UCAggCGCGuGCAaCGAGU- -5' |
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10595 | 5' | -55.7 | NC_002687.1 | + | 51882 | 0.66 | 0.983501 |
Target: 5'- -gCGACGaAGUgaGCGC-CGUgGCUCAa -3' miRNA: 3'- gaGCUGC-UCAggCGCGuGCAaCGAGU- -5' |
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10595 | 5' | -55.7 | NC_002687.1 | + | 113654 | 0.66 | 0.983501 |
Target: 5'- gCUCGGCcuGUCCGUGCGgGgaGUUCu -3' miRNA: 3'- -GAGCUGcuCAGGCGCGUgCaaCGAGu -5' |
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10595 | 5' | -55.7 | NC_002687.1 | + | 4328 | 0.66 | 0.981643 |
Target: 5'- aUCGACGAGcacaUGCGCACGUaccugguagaUGCa-- -3' miRNA: 3'- gAGCUGCUCag--GCGCGUGCA----------ACGagu -5' |
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10595 | 5' | -55.7 | NC_002687.1 | + | 26573 | 0.66 | 0.981643 |
Target: 5'- -aCGGCGGccuucagcuguGUCCGUGCuuCGUUGgUCAg -3' miRNA: 3'- gaGCUGCU-----------CAGGCGCGu-GCAACgAGU- -5' |
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10595 | 5' | -55.7 | NC_002687.1 | + | 199041 | 0.66 | 0.979631 |
Target: 5'- --gGGCGAGUgUGCGCAUGagcGCUCc -3' miRNA: 3'- gagCUGCUCAgGCGCGUGCaa-CGAGu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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