Results 21 - 40 of 58 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
10596 | 3' | -64 | NC_002687.1 | + | 238234 | 0.67 | 0.647646 |
Target: 5'- aUCCugGUC--AGCGCCGaCGCCgGCAAc -3' miRNA: 3'- -AGGugCGGguUCGCGGCgGCGG-CGUU- -5' |
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10596 | 3' | -64 | NC_002687.1 | + | 298727 | 0.67 | 0.647646 |
Target: 5'- -gCACaGCUCGAGCGUCGCgGCacaCGCAAg -3' miRNA: 3'- agGUG-CGGGUUCGCGGCGgCG---GCGUU- -5' |
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10596 | 3' | -64 | NC_002687.1 | + | 295516 | 0.67 | 0.638292 |
Target: 5'- -gCACGCaCC-GGCGCCGUgUGCUGCAGg -3' miRNA: 3'- agGUGCG-GGuUCGCGGCG-GCGGCGUU- -5' |
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10596 | 3' | -64 | NC_002687.1 | + | 18252 | 0.67 | 0.638292 |
Target: 5'- aCCAaaGCUCGgacucuugaAGCGCCGCUgcgGCCGCAAc -3' miRNA: 3'- aGGUg-CGGGU---------UCGCGGCGG---CGGCGUU- -5' |
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10596 | 3' | -64 | NC_002687.1 | + | 215776 | 0.67 | 0.638292 |
Target: 5'- cUUC-CGCUgAAGUcgucGUCGCCGCCGCAc -3' miRNA: 3'- -AGGuGCGGgUUCG----CGGCGGCGGCGUu -5' |
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10596 | 3' | -64 | NC_002687.1 | + | 260920 | 0.67 | 0.638292 |
Target: 5'- cCCACuccucauCCCAugAGcCGCUGCCGCCGuCAAg -3' miRNA: 3'- aGGUGc------GGGU--UC-GCGGCGGCGGC-GUU- -5' |
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10596 | 3' | -64 | NC_002687.1 | + | 311253 | 0.67 | 0.628934 |
Target: 5'- aUCCACGgggcccccuuuUCCAAuaauCGCCGCCGCaCGCGc -3' miRNA: 3'- -AGGUGC-----------GGGUUc---GCGGCGGCG-GCGUu -5' |
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10596 | 3' | -64 | NC_002687.1 | + | 322956 | 0.68 | 0.619578 |
Target: 5'- aUUCAUGCCCGAuGUacuGCUGCUGCUGCu- -3' miRNA: 3'- -AGGUGCGGGUU-CG---CGGCGGCGGCGuu -5' |
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10596 | 3' | -64 | NC_002687.1 | + | 297975 | 0.68 | 0.61023 |
Target: 5'- --aACGCCCuuGCGuuGCgGCCGCc- -3' miRNA: 3'- aggUGCGGGuuCGCggCGgCGGCGuu -5' |
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10596 | 3' | -64 | NC_002687.1 | + | 307256 | 0.68 | 0.591581 |
Target: 5'- cUCCAC-CaCC-AGCaCCGCCGCCGCc- -3' miRNA: 3'- -AGGUGcG-GGuUCGcGGCGGCGGCGuu -5' |
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10596 | 3' | -64 | NC_002687.1 | + | 259915 | 0.68 | 0.58229 |
Target: 5'- gCCuguuUGCUCAAGuUGCCGgCGCCGCGc -3' miRNA: 3'- aGGu---GCGGGUUC-GCGGCgGCGGCGUu -5' |
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10596 | 3' | -64 | NC_002687.1 | + | 201315 | 0.68 | 0.581363 |
Target: 5'- gCCcCGCCCGAGCGCgcaugagccacugUGCCaaGCCGCc- -3' miRNA: 3'- aGGuGCGGGUUCGCG-------------GCGG--CGGCGuu -5' |
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10596 | 3' | -64 | NC_002687.1 | + | 276322 | 0.69 | 0.563805 |
Target: 5'- aCCGCGUCCAcuUGCaucagcaGCUGCCGCAu -3' miRNA: 3'- aGGUGCGGGUucGCGg------CGGCGGCGUu -5' |
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10596 | 3' | -64 | NC_002687.1 | + | 182053 | 0.69 | 0.562884 |
Target: 5'- cUCCAagguUGCCCGAGCGuuGCCcauguccucggcgGUCGCGc -3' miRNA: 3'- -AGGU----GCGGGUUCGCggCGG-------------CGGCGUu -5' |
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10596 | 3' | -64 | NC_002687.1 | + | 284255 | 0.69 | 0.554619 |
Target: 5'- cUCACaaGCCCcAGcCGCUGCUGCUGCGAu -3' miRNA: 3'- aGGUG--CGGGuUC-GCGGCGGCGGCGUU- -5' |
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10596 | 3' | -64 | NC_002687.1 | + | 96367 | 0.69 | 0.527348 |
Target: 5'- cUCGCGUgCuuGGUGCCGgCGCCGCGGa -3' miRNA: 3'- aGGUGCGgGu-UCGCGGCgGCGGCGUU- -5' |
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10596 | 3' | -64 | NC_002687.1 | + | 145470 | 0.69 | 0.527348 |
Target: 5'- cCCAgCGCCCcGGCGCgCGCCuCgGCGAg -3' miRNA: 3'- aGGU-GCGGGuUCGCG-GCGGcGgCGUU- -5' |
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10596 | 3' | -64 | NC_002687.1 | + | 72940 | 0.7 | 0.513007 |
Target: 5'- aUCACGUuucuuuacucgugugCCGA-CGCCGCCGCCGCc- -3' miRNA: 3'- aGGUGCG---------------GGUUcGCGGCGGCGGCGuu -5' |
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10596 | 3' | -64 | NC_002687.1 | + | 225853 | 0.7 | 0.509447 |
Target: 5'- cUUACGUUCcgcCGCCGCCGCCGCGu -3' miRNA: 3'- aGGUGCGGGuucGCGGCGGCGGCGUu -5' |
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10596 | 3' | -64 | NC_002687.1 | + | 171852 | 0.7 | 0.505897 |
Target: 5'- aUCugGCCCAGGUGuuGCCGCaaacuaugauacgGCAGa -3' miRNA: 3'- aGGugCGGGUUCGCggCGGCGg------------CGUU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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