miRNA display CGI


Results 1 - 20 of 23 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10596 5' -51.5 NC_002687.1 + 10499 0.66 0.999228
Target:  5'- ----aCGGCAACGuacAGCCUGCUaccGUGa -3'
miRNA:   3'- acaaaGUCGUUGCca-UCGGACGA---CAC- -5'
10596 5' -51.5 NC_002687.1 + 216215 0.66 0.999228
Target:  5'- ----gCAGCAACGGgguuGCCccggGUUGUGc -3'
miRNA:   3'- acaaaGUCGUUGCCau--CGGa---CGACAC- -5'
10596 5' -51.5 NC_002687.1 + 69035 0.66 0.999228
Target:  5'- aUGUU--GGCGAUGGUGGCg-GCgGUGg -3'
miRNA:   3'- -ACAAagUCGUUGCCAUCGgaCGaCAC- -5'
10596 5' -51.5 NC_002687.1 + 128689 0.66 0.999061
Target:  5'- aUGUagCAGgAGCaG-AGCCUGCUGUc -3'
miRNA:   3'- -ACAaaGUCgUUGcCaUCGGACGACAc -5'
10596 5' -51.5 NC_002687.1 + 11399 0.66 0.998865
Target:  5'- gGUagCAGCAGCGGUAGCggugGCa--- -3'
miRNA:   3'- aCAaaGUCGUUGCCAUCGga--CGacac -5'
10596 5' -51.5 NC_002687.1 + 173167 0.66 0.998865
Target:  5'- cGUUugUCA-CAAuCGGUgccGGCCUGUUGUGc -3'
miRNA:   3'- aCAA--AGUcGUU-GCCA---UCGGACGACAC- -5'
10596 5' -51.5 NC_002687.1 + 6501 0.66 0.998364
Target:  5'- --aUUCAGCGACGGUAGgUUuuguccaacGCUGg- -3'
miRNA:   3'- acaAAGUCGUUGCCAUCgGA---------CGACac -5'
10596 5' -51.5 NC_002687.1 + 277198 0.66 0.998364
Target:  5'- uUGUUcgacgUCGGCGugGGUugcAGCCUGUg--- -3'
miRNA:   3'- -ACAA-----AGUCGUugCCA---UCGGACGacac -5'
10596 5' -51.5 NC_002687.1 + 87784 0.66 0.998051
Target:  5'- gGUUgcacCGGCAucUGGUAGCCggGCUGcUGa -3'
miRNA:   3'- aCAAa---GUCGUu-GCCAUCGGa-CGAC-AC- -5'
10596 5' -51.5 NC_002687.1 + 234609 0.67 0.997689
Target:  5'- cUGUUUCuGCuucaaGGcacgGGCCUGCUGg- -3'
miRNA:   3'- -ACAAAGuCGuug--CCa---UCGGACGACac -5'
10596 5' -51.5 NC_002687.1 + 224195 0.67 0.997689
Target:  5'- gGUggCGGUGGCGGUGGCggugGCgGUGg -3'
miRNA:   3'- aCAaaGUCGUUGCCAUCGga--CGaCAC- -5'
10596 5' -51.5 NC_002687.1 + 179878 0.67 0.996993
Target:  5'- cUGUUUCAGCAggcaACGGcaaagaacaucgaauUcaaaagccuuGGCCUGCUGg- -3'
miRNA:   3'- -ACAAAGUCGU----UGCC---------------A----------UCGGACGACac -5'
10596 5' -51.5 NC_002687.1 + 224984 0.67 0.996795
Target:  5'- gUGUUggggaCAGCGGCGGUggAGCUggaGCUGg- -3'
miRNA:   3'- -ACAAa----GUCGUUGCCA--UCGGa--CGACac -5'
10596 5' -51.5 NC_002687.1 + 280940 0.67 0.996251
Target:  5'- gUGUUgaagCAGCGucgGCGGgGGCCUGg-GUGg -3'
miRNA:   3'- -ACAAa---GUCGU---UGCCaUCGGACgaCAC- -5'
10596 5' -51.5 NC_002687.1 + 256282 0.69 0.989968
Target:  5'- aUGUUUCaaAGCAAUGGUgAGC-UGCUGg- -3'
miRNA:   3'- -ACAAAG--UCGUUGCCA-UCGgACGACac -5'
10596 5' -51.5 NC_002687.1 + 282163 0.69 0.988625
Target:  5'- cGg--CAGCGGCGGgaguagGGCCUGCg--- -3'
miRNA:   3'- aCaaaGUCGUUGCCa-----UCGGACGacac -5'
10596 5' -51.5 NC_002687.1 + 279116 0.69 0.983748
Target:  5'- aUGUgaaUCGGCAGCGGUAGCaagaGCaccaGUGg -3'
miRNA:   3'- -ACAa--AGUCGUUGCCAUCGga--CGa---CAC- -5'
10596 5' -51.5 NC_002687.1 + 307651 0.69 0.983748
Target:  5'- gGgaUCGGCGGCGGUGGCggugguggUGCUGg- -3'
miRNA:   3'- aCaaAGUCGUUGCCAUCGg-------ACGACac -5'
10596 5' -51.5 NC_002687.1 + 18580 0.7 0.972319
Target:  5'- gGUgcu-GCGACGGUGucGuCCUGCUGUGu -3'
miRNA:   3'- aCAaaguCGUUGCCAU--C-GGACGACAC- -5'
10596 5' -51.5 NC_002687.1 + 12191 0.72 0.943547
Target:  5'- cGg--CAGCGgaaGCGGUAGCa-GCUGUGg -3'
miRNA:   3'- aCaaaGUCGU---UGCCAUCGgaCGACAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.