miRNA display CGI


Results 21 - 31 of 31 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10597 5' -48.1 NC_002687.1 + 312753 0.68 0.999737
Target:  5'- -aACGCGAGucgauauggccGCCGUCGCgGAUACCu-- -3'
miRNA:   3'- caUGUGUUU-----------CGGCAGUG-CUAUGGuau -5'
10597 5' -48.1 NC_002687.1 + 314975 0.68 0.999737
Target:  5'- -aACGagucAAGCCGUCACGucgGCCAa- -3'
miRNA:   3'- caUGUgu--UUCGGCAGUGCua-UGGUau -5'
10597 5' -48.1 NC_002687.1 + 65567 0.68 0.999737
Target:  5'- -gGCACAugaugccguGCCGUCGcCGGUGuCCAUGa -3'
miRNA:   3'- caUGUGUuu-------CGGCAGU-GCUAU-GGUAU- -5'
10597 5' -48.1 NC_002687.1 + 165443 0.69 0.999669
Target:  5'- gGUACAgAGAGCagugGUCGCGGauaUACCAa- -3'
miRNA:   3'- -CAUGUgUUUCGg---CAGUGCU---AUGGUau -5'
10597 5' -48.1 NC_002687.1 + 142500 0.69 0.999669
Target:  5'- cGUACACAuuGCCGg--UGGUACCGg- -3'
miRNA:   3'- -CAUGUGUuuCGGCaguGCUAUGGUau -5'
10597 5' -48.1 NC_002687.1 + 60452 0.69 0.999661
Target:  5'- cGUGCACcucGAcGUCGUCACuuaugguGAUGCCGUAa -3'
miRNA:   3'- -CAUGUG---UUuCGGCAGUG-------CUAUGGUAU- -5'
10597 5' -48.1 NC_002687.1 + 257351 0.69 0.999586
Target:  5'- uGUGCAgCAucGCCGcgaUCGCGAUugCAg- -3'
miRNA:   3'- -CAUGU-GUuuCGGC---AGUGCUAugGUau -5'
10597 5' -48.1 NC_002687.1 + 148995 0.69 0.999586
Target:  5'- -cGCACGAcuUCGuUCAUGGUGCCAUAu -3'
miRNA:   3'- caUGUGUUucGGC-AGUGCUAUGGUAU- -5'
10597 5' -48.1 NC_002687.1 + 254342 0.73 0.986451
Target:  5'- cUGCGCGucGGCCGUCAUGGUGuCCGc- -3'
miRNA:   3'- cAUGUGUu-UCGGCAGUGCUAU-GGUau -5'
10597 5' -48.1 NC_002687.1 + 112040 0.75 0.967635
Target:  5'- -aACGCAGAucucuucaauGCCGUCGuCGAUGCCAUu -3'
miRNA:   3'- caUGUGUUU----------CGGCAGU-GCUAUGGUAu -5'
10597 5' -48.1 NC_002687.1 + 332894 1.08 0.037557
Target:  5'- cGUACACAAAGCCGUCACGAUACCAUAu -3'
miRNA:   3'- -CAUGUGUUUCGGCAGUGCUAUGGUAU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.