Results 1 - 17 of 17 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
1060 | 3' | -51.3 | NC_000929.1 | + | 10593 | 0.66 | 0.839604 |
Target: 5'- -----aUGCCU--UACCGCGAUAuuGCCg -3' miRNA: 3'- agucuaGCGGAaaAUGGCGCUGU--CGG- -5' |
|||||||
1060 | 3' | -51.3 | NC_000929.1 | + | 22354 | 0.66 | 0.820582 |
Target: 5'- cCGGGUUGCCaUUUUucCCGgaGGCGGCUu -3' miRNA: 3'- aGUCUAGCGG-AAAAu-GGCg-CUGUCGG- -5' |
|||||||
1060 | 3' | -51.3 | NC_000929.1 | + | 4169 | 0.67 | 0.790424 |
Target: 5'- uUCAcuUCGCCUUgcaGCCaUGACGGCUc -3' miRNA: 3'- -AGUcuAGCGGAAaa-UGGcGCUGUCGG- -5' |
|||||||
1060 | 3' | -51.3 | NC_000929.1 | + | 30041 | 0.67 | 0.790424 |
Target: 5'- -uGGGgcgugCGCCgcaaACagGCGACAGCCg -3' miRNA: 3'- agUCUa----GCGGaaaaUGg-CGCUGUCGG- -5' |
|||||||
1060 | 3' | -51.3 | NC_000929.1 | + | 30108 | 0.67 | 0.790424 |
Target: 5'- gCGGcuGUCGCCUgUUUGCgGCG-CAcGCCc -3' miRNA: 3'- aGUC--UAGCGGA-AAAUGgCGCuGU-CGG- -5' |
|||||||
1060 | 3' | -51.3 | NC_000929.1 | + | 22447 | 0.68 | 0.702886 |
Target: 5'- gCuGAUgGCU--UUGCCGUGACAGUg -3' miRNA: 3'- aGuCUAgCGGaaAAUGGCGCUGUCGg -5' |
|||||||
1060 | 3' | -51.3 | NC_000929.1 | + | 27976 | 0.68 | 0.702886 |
Target: 5'- aUCAGGUCaGCCgUUUUGucacguCCgGCGACAGUg -3' miRNA: 3'- -AGUCUAG-CGG-AAAAU------GG-CGCUGUCGg -5' |
|||||||
1060 | 3' | -51.3 | NC_000929.1 | + | 16670 | 0.68 | 0.702886 |
Target: 5'- gCAGAcagCGCCcgga--CGCGACAGCg -3' miRNA: 3'- aGUCUa--GCGGaaaaugGCGCUGUCGg -5' |
|||||||
1060 | 3' | -51.3 | NC_000929.1 | + | 10871 | 0.68 | 0.691457 |
Target: 5'- cCAGAUgGCCcgcugggugUUUGCCGCa--GGCCa -3' miRNA: 3'- aGUCUAgCGGa--------AAAUGGCGcugUCGG- -5' |
|||||||
1060 | 3' | -51.3 | NC_000929.1 | + | 16188 | 0.69 | 0.66842 |
Target: 5'- cCAGGUgauguuguaGCCUUUgGCgcggaaauaCGCGACAGCCu -3' miRNA: 3'- aGUCUAg--------CGGAAAaUG---------GCGCUGUCGG- -5' |
|||||||
1060 | 3' | -51.3 | NC_000929.1 | + | 17303 | 0.69 | 0.64523 |
Target: 5'- aCAG-UCGCUUgaaGCCGCGAUuGCUg -3' miRNA: 3'- aGUCuAGCGGAaaaUGGCGCUGuCGG- -5' |
|||||||
1060 | 3' | -51.3 | NC_000929.1 | + | 10987 | 0.7 | 0.587224 |
Target: 5'- cCAGAUUGCCaUUUccacuUCGCGACGGUUc -3' miRNA: 3'- aGUCUAGCGGaAAAu----GGCGCUGUCGG- -5' |
|||||||
1060 | 3' | -51.3 | NC_000929.1 | + | 10730 | 0.7 | 0.575706 |
Target: 5'- --cGAUCGUCUUgucagggUGCCGCuGAC-GCCa -3' miRNA: 3'- aguCUAGCGGAAa------AUGGCG-CUGuCGG- -5' |
|||||||
1060 | 3' | -51.3 | NC_000929.1 | + | 22390 | 0.71 | 0.508 |
Target: 5'- gCAGAUCGCCcaUUcCCGCGAUAcuugcGCUg -3' miRNA: 3'- aGUCUAGCGGaaAAuGGCGCUGU-----CGG- -5' |
|||||||
1060 | 3' | -51.3 | NC_000929.1 | + | 29528 | 0.72 | 0.453224 |
Target: 5'- uUCAGAugaUCGCCguggaugguggggUgacagUUACCGCGACcGCCc -3' miRNA: 3'- -AGUCU---AGCGG-------------Aa----AAUGGCGCUGuCGG- -5' |
|||||||
1060 | 3' | -51.3 | NC_000929.1 | + | 31216 | 0.81 | 0.14841 |
Target: 5'- cUCAGAUUGCCggucauacgcaUUUUAuUCGCGGCAGCCc -3' miRNA: 3'- -AGUCUAGCGG-----------AAAAU-GGCGCUGUCGG- -5' |
|||||||
1060 | 3' | -51.3 | NC_000929.1 | + | 19854 | 1.14 | 0.000701 |
Target: 5'- gUCAGAUCGCCUUUUACCGCGACAGCCa -3' miRNA: 3'- -AGUCUAGCGGAAAAUGGCGCUGUCGG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home