Results 1 - 8 of 8 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
1060 | 5' | -58.5 | NC_000929.1 | + | 28239 | 0.67 | 0.401941 |
Target: 5'- -uGGCUGU-GCUGGCAGCcCGGCu-- -3' miRNA: 3'- cuUCGGCAuUGGCCGUCGuGCCGccc -5' |
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1060 | 5' | -58.5 | NC_000929.1 | + | 26745 | 0.74 | 0.140644 |
Target: 5'- gGAAGCUGUAACCGGUgucaucgaugauaucAGUgauGCGGUGGa -3' miRNA: 3'- -CUUCGGCAUUGGCCG---------------UCG---UGCCGCCc -5' |
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1060 | 5' | -58.5 | NC_000929.1 | + | 25597 | 0.7 | 0.25854 |
Target: 5'- cAGGCCGUGccguuACCGGUAcGC-CGGgUGGGg -3' miRNA: 3'- cUUCGGCAU-----UGGCCGU-CGuGCC-GCCC- -5' |
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1060 | 5' | -58.5 | NC_000929.1 | + | 25527 | 0.74 | 0.120891 |
Target: 5'- -cGGCUGUGGcCCGGaCAGCAauaacggcUGGCGGGg -3' miRNA: 3'- cuUCGGCAUU-GGCC-GUCGU--------GCCGCCC- -5' |
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1060 | 5' | -58.5 | NC_000929.1 | + | 24955 | 0.67 | 0.374814 |
Target: 5'- --cGCCGggugcuUAACUGGCAcGaCAUGGCGGa -3' miRNA: 3'- cuuCGGC------AUUGGCCGU-C-GUGCCGCCc -5' |
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1060 | 5' | -58.5 | NC_000929.1 | + | 22980 | 0.74 | 0.120891 |
Target: 5'- -cGGCC-UGACCGGUGGCAaaGCGGGu -3' miRNA: 3'- cuUCGGcAUUGGCCGUCGUgcCGCCC- -5' |
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1060 | 5' | -58.5 | NC_000929.1 | + | 19820 | 1.09 | 0.00027 |
Target: 5'- aGAAGCCGUAACCGGCAGCACGGCGGGu -3' miRNA: 3'- -CUUCGGCAUUGGCCGUCGUGCCGCCC- -5' |
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1060 | 5' | -58.5 | NC_000929.1 | + | 14169 | 0.67 | 0.401017 |
Target: 5'- --cGCCGUuACCGGUGGCAucaaaugcagcgcCGGUaaaacGGGg -3' miRNA: 3'- cuuCGGCAuUGGCCGUCGU-------------GCCG-----CCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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