miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1061 5' -48.4 NC_000929.1 + 1553 0.68 0.825001
Target:  5'- cUCAGcAAUAACGCCGcuuUCGCUucaacagguaaagaGuUCGCa -3'
miRNA:   3'- aAGUC-UUAUUGCGGUu--AGCGA--------------C-AGCG- -5'
1061 5' -48.4 NC_000929.1 + 11520 0.72 0.623627
Target:  5'- -cCGGAcUGAUGCCuuGUCGCgGUUGCa -3'
miRNA:   3'- aaGUCUuAUUGCGGu-UAGCGaCAGCG- -5'
1061 5' -48.4 NC_000929.1 + 12228 0.68 0.827982
Target:  5'- gUCAGGAUGugGCagaaGGUCGUgccCGCg -3'
miRNA:   3'- aAGUCUUAUugCGg---UUAGCGacaGCG- -5'
1061 5' -48.4 NC_000929.1 + 12596 0.66 0.919698
Target:  5'- gUCAGugcUGACGUCAuuucaCGCaucUGUCGCa -3'
miRNA:   3'- aAGUCuu-AUUGCGGUua---GCG---ACAGCG- -5'
1061 5' -48.4 NC_000929.1 + 13573 0.68 0.856518
Target:  5'- aUCAcgcuGGAUGAUGCC-AUCGCUGaCGg -3'
miRNA:   3'- aAGU----CUUAUUGCGGuUAGCGACaGCg -5'
1061 5' -48.4 NC_000929.1 + 14435 0.67 0.889813
Target:  5'- -aCAGA---GCGCCAcggcaaaGUCGCcaUGUCGUc -3'
miRNA:   3'- aaGUCUuauUGCGGU-------UAGCG--ACAGCG- -5'
1061 5' -48.4 NC_000929.1 + 15060 0.66 0.919698
Target:  5'- -gCAGAAcAGCGCCGgAUCGCgaUGaUGCa -3'
miRNA:   3'- aaGUCUUaUUGCGGU-UAGCG--ACaGCG- -5'
1061 5' -48.4 NC_000929.1 + 15377 0.72 0.635654
Target:  5'- aUCGGAAUAAUGCCAccgGCacGUCGCc -3'
miRNA:   3'- aAGUCUUAUUGCGGUuagCGa-CAGCG- -5'
1061 5' -48.4 NC_000929.1 + 18886 0.66 0.912912
Target:  5'- -cCAGAAcGGCGCuCAGgcUgGCUGUgGCg -3'
miRNA:   3'- aaGUCUUaUUGCG-GUU--AgCGACAgCG- -5'
1061 5' -48.4 NC_000929.1 + 22097 0.69 0.775687
Target:  5'- -aCAG-AUAcCGCCAGUCGCUGaccgGCa -3'
miRNA:   3'- aaGUCuUAUuGCGGUUAGCGACag--CG- -5'
1061 5' -48.4 NC_000929.1 + 24038 1.1 0.002542
Target:  5'- uUUCAGAAUAACGCCAAUCGCUGUCGCc -3'
miRNA:   3'- -AAGUCUUAUUGCGGUUAGCGACAGCG- -5'
1061 5' -48.4 NC_000929.1 + 25312 0.69 0.807709
Target:  5'- -cCGGAugccAUGACGUCugagaCGCUGUUGCa -3'
miRNA:   3'- aaGUCU----UAUUGCGGuua--GCGACAGCG- -5'
1061 5' -48.4 NC_000929.1 + 25541 0.66 0.93228
Target:  5'- -gCAG-GUAAUGCCAGcgGCUGUgGCc -3'
miRNA:   3'- aaGUCuUAUUGCGGUUagCGACAgCG- -5'
1061 5' -48.4 NC_000929.1 + 27445 0.68 0.856518
Target:  5'- gUCAGAAUGACGCUAuccaGC-GcCGCc -3'
miRNA:   3'- aAGUCUUAUUGCGGUuag-CGaCaGCG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.