miRNA display CGI


Results 1 - 18 of 18 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1062 3' -52.5 NC_000929.1 + 25400 1.11 0.0007
Target:  5'- aCACGCUGAAUGCCGAUACCCUGCAACa -3'
miRNA:   3'- -GUGCGACUUACGGCUAUGGGACGUUG- -5'
1062 3' -52.5 NC_000929.1 + 18365 0.77 0.187606
Target:  5'- cCACGCUGGAcgGCgGcgGCCCaGCAGCg -3'
miRNA:   3'- -GUGCGACUUa-CGgCuaUGGGaCGUUG- -5'
1062 3' -52.5 NC_000929.1 + 1788 0.75 0.235069
Target:  5'- aGCGCUGAccugGUa-AUGCCCUGCAACg -3'
miRNA:   3'- gUGCGACUua--CGgcUAUGGGACGUUG- -5'
1062 3' -52.5 NC_000929.1 + 31766 0.75 0.255318
Target:  5'- gUACGCUG--UGCUGAUGCCCcgGCAGu -3'
miRNA:   3'- -GUGCGACuuACGGCUAUGGGa-CGUUg -5'
1062 3' -52.5 NC_000929.1 + 29912 0.72 0.401126
Target:  5'- aACGCUGAGUGCCauugcuuaugcucagGggGCCUUGCuGCc -3'
miRNA:   3'- gUGCGACUUACGG---------------CuaUGGGACGuUG- -5'
1062 3' -52.5 NC_000929.1 + 8091 0.71 0.427019
Target:  5'- gGCGCaccAGUGCUGAUGCaaucgcauaaCCUGCAACa -3'
miRNA:   3'- gUGCGac-UUACGGCUAUG----------GGACGUUG- -5'
1062 3' -52.5 NC_000929.1 + 14964 0.69 0.557673
Target:  5'- gCugGCUGGgaaaaugcgcGUGCCGGUGgCgCUGCAu- -3'
miRNA:   3'- -GugCGACU----------UACGGCUAUgG-GACGUug -5'
1062 3' -52.5 NC_000929.1 + 13191 0.69 0.557673
Target:  5'- gGCGCUGGAauacaucGCCGccuGUGCCCUGUuuGCc -3'
miRNA:   3'- gUGCGACUUa------CGGC---UAUGGGACGu-UG- -5'
1062 3' -52.5 NC_000929.1 + 26448 0.68 0.61569
Target:  5'- uGCGCUGAuggAUGCUcuuGAUGCUCcggGUAGCg -3'
miRNA:   3'- gUGCGACU---UACGG---CUAUGGGa--CGUUG- -5'
1062 3' -52.5 NC_000929.1 + 3799 0.67 0.639085
Target:  5'- cCACGCcGuaaaggGCCGcucucccgcGCCCUGCGACg -3'
miRNA:   3'- -GUGCGaCuua---CGGCua-------UGGGACGUUG- -5'
1062 3' -52.5 NC_000929.1 + 21815 0.67 0.650778
Target:  5'- aCGCGCUGAcggggaGCCGGUGuuCCgCUGaCGGCa -3'
miRNA:   3'- -GUGCGACUua----CGGCUAU--GG-GAC-GUUG- -5'
1062 3' -52.5 NC_000929.1 + 2126 0.67 0.650778
Target:  5'- -uCGCUGcuGUGCCGGUAUCagaUGCAu- -3'
miRNA:   3'- guGCGACu-UACGGCUAUGGg--ACGUug -5'
1062 3' -52.5 NC_000929.1 + 6151 0.67 0.674093
Target:  5'- aACGCUGGAgcGUCu-UGgCCUGCAACg -3'
miRNA:   3'- gUGCGACUUa-CGGcuAUgGGACGUUG- -5'
1062 3' -52.5 NC_000929.1 + 3111 0.67 0.68569
Target:  5'- aCGCGCUGGAaguUGCUGA-ACUgCUGCcGCa -3'
miRNA:   3'- -GUGCGACUU---ACGGCUaUGG-GACGuUG- -5'
1062 3' -52.5 NC_000929.1 + 28990 0.66 0.708696
Target:  5'- gGCGCaGAGgcGCUGAUugCCUGUguaGGCg -3'
miRNA:   3'- gUGCGaCUUa-CGGCUAugGGACG---UUG- -5'
1062 3' -52.5 NC_000929.1 + 15284 0.66 0.708696
Target:  5'- cCACGCUGAugcagGCCGugauggAUAUCggGCGACg -3'
miRNA:   3'- -GUGCGACUua---CGGC------UAUGGgaCGUUG- -5'
1062 3' -52.5 NC_000929.1 + 30114 0.66 0.720079
Target:  5'- -cCGCUGGcgGCUGucGCCUguuUGCGGCg -3'
miRNA:   3'- guGCGACUuaCGGCuaUGGG---ACGUUG- -5'
1062 3' -52.5 NC_000929.1 + 28528 0.66 0.742534
Target:  5'- aACuCUGGAUGCCGAa--CCUGCu-- -3'
miRNA:   3'- gUGcGACUUACGGCUaugGGACGuug -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.