miRNA display CGI


Results 1 - 7 of 7 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10620 3' -56.3 NC_002701.1 + 2400 0.76 0.016376
Target:  5'- --aGCGGUguguugagccagUgCGCGGCGACGCAGCUGa -3'
miRNA:   3'- agaCGCCA------------AgGUGUCGUUGCGUCGGC- -5'
10620 3' -56.3 NC_002701.1 + 3458 0.66 0.107798
Target:  5'- aCUcGCGGUgUUGCAGgGACGCGGCg- -3'
miRNA:   3'- aGA-CGCCAaGGUGUCgUUGCGUCGgc -5'
10620 3' -56.3 NC_002701.1 + 3766 1.1 0.000017
Target:  5'- cUCUGCGGUUCCACAGCAACGCAGCCGg -3'
miRNA:   3'- -AGACGCCAAGGUGUCGUUGCGUCGGC- -5'
10620 3' -56.3 NC_002701.1 + 1258 0.68 0.070083
Target:  5'- -aUGUGGUUgCUgccaccaacccugacGCAGCAcaucGCGCAGCCa -3'
miRNA:   3'- agACGCCAA-GG---------------UGUCGU----UGCGUCGGc -5'
10620 3' -56.3 NC_002701.1 + 4967 0.66 0.104213
Target:  5'- --cGaCGGUUCCAUAGCcGCauaaGCAGUCa -3'
miRNA:   3'- agaC-GCCAAGGUGUCGuUG----CGUCGGc -5'
10620 3' -56.3 NC_002701.1 + 4736 0.66 0.107798
Target:  5'- aCUGCGGUaaCACGGUccaGGCGCcaaGGCUa -3'
miRNA:   3'- aGACGCCAagGUGUCG---UUGCG---UCGGc -5'
10620 3' -56.3 NC_002701.1 + 1884 0.66 0.110004
Target:  5'- gUUUGUGGUguaaaguacguacCCACAGguGCGCGGaCUGc -3'
miRNA:   3'- -AGACGCCAa------------GGUGUCguUGCGUC-GGC- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.