miRNA display CGI


Results 1 - 8 of 8 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10625 3' -65.6 NC_002702.1 + 32455 1.11 0.000041
Target:  5'- cCGCCUCGCACGCCACGGGGCGCGCCCg -3'
miRNA:   3'- -GCGGAGCGUGCGGUGCCCCGCGCGGG- -5'
10625 3' -65.6 NC_002702.1 + 167 1.11 0.000041
Target:  5'- cCGCCUCGCACGCCACGGGGCGCGCCCg -3'
miRNA:   3'- -GCGGAGCGUGCGGUGCCCCGCGCGGG- -5'
10625 3' -65.6 NC_002702.1 + 14681 0.74 0.042656
Target:  5'- aCGCCUCGcCAgGCCGCuaagaGGGGUgccaGCGCCg -3'
miRNA:   3'- -GCGGAGC-GUgCGGUG-----CCCCG----CGCGGg -5'
10625 3' -65.6 NC_002702.1 + 23994 0.73 0.055563
Target:  5'- gGCC-CGCACGCUACcuguaccagcccauGGGUGCGCCg -3'
miRNA:   3'- gCGGaGCGUGCGGUGc-------------CCCGCGCGGg -5'
10625 3' -65.6 NC_002702.1 + 13974 0.71 0.068511
Target:  5'- uCGCCUCGCuCGCCGCagcaGGGCucuggccGCGCgCa -3'
miRNA:   3'- -GCGGAGCGuGCGGUGc---CCCG-------CGCGgG- -5'
10625 3' -65.6 NC_002702.1 + 13662 0.71 0.072427
Target:  5'- gGUCUgGguUGCCGCGGcauguacGGCgGCGCCCg -3'
miRNA:   3'- gCGGAgCguGCGGUGCC-------CCG-CGCGGG- -5'
10625 3' -65.6 NC_002702.1 + 10451 0.71 0.078926
Target:  5'- -uCCUCaGCGcCGCCGucgcCGGGGCGC-CCCa -3'
miRNA:   3'- gcGGAG-CGU-GCGGU----GCCCCGCGcGGG- -5'
10625 3' -65.6 NC_002702.1 + 11146 0.67 0.136159
Target:  5'- -uCCUCuC-CGCCACGGGG-GCGUUCa -3'
miRNA:   3'- gcGGAGcGuGCGGUGCCCCgCGCGGG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.