miRNA display CGI


Results 1 - 7 of 7 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10626 5' -53.7 NC_002702.1 + 3610 1.08 0.00077
Target:  5'- gGACCACGCCGGCAACAUCUCCAAUCUg -3'
miRNA:   3'- -CUGGUGCGGCCGUUGUAGAGGUUAGA- -5'
10626 5' -53.7 NC_002702.1 + 6634 0.66 0.650411
Target:  5'- uGGCCGCGCaGGUGAUuuGUCaCCAGUCc -3'
miRNA:   3'- -CUGGUGCGgCCGUUG--UAGaGGUUAGa -5'
10626 5' -53.7 NC_002702.1 + 13241 0.69 0.458568
Target:  5'- uACCGaGCCGGUGACGUUucgcgCCAGUCa -3'
miRNA:   3'- cUGGUgCGGCCGUUGUAGa----GGUUAGa -5'
10626 5' -53.7 NC_002702.1 + 13271 0.68 0.512653
Target:  5'- --aCAUGCCGGgGACG-CUCCAGUa- -3'
miRNA:   3'- cugGUGCGGCCgUUGUaGAGGUUAga -5'
10626 5' -53.7 NC_002702.1 + 14044 0.78 0.114902
Target:  5'- cGCCGCGCCGGCGGugguCGUCUCCGccccucGUCg -3'
miRNA:   3'- cUGGUGCGGCCGUU----GUAGAGGU------UAGa -5'
10626 5' -53.7 NC_002702.1 + 15560 0.68 0.490677
Target:  5'- aACCAgCGCCGGCAAaaagcCUCCGcUCa -3'
miRNA:   3'- cUGGU-GCGGCCGUUgua--GAGGUuAGa -5'
10626 5' -53.7 NC_002702.1 + 28399 0.71 0.351502
Target:  5'- aACCAgG-CGGCuGCAUCUCCAGUUc -3'
miRNA:   3'- cUGGUgCgGCCGuUGUAGAGGUUAGa -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.