miRNA display CGI


Results 1 - 6 of 6 are showing below:
Show page:



<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10628 5' -56.9 NC_002702.1 + 8312 1.07 0.000371
Target:  5'- gAAGUGGAGAUGGAGGAGGAGCCUGAGg -3'
miRNA:   3'- -UUCACCUCUACCUCCUCCUCGGACUC- -5'
10628 5' -56.9 NC_002702.1 + 15283 0.72 0.185931
Target:  5'- -cGUGGcAGAcgacggggucUGGuGGGcGGAGCCUGAGg -3'
miRNA:   3'- uuCACC-UCU----------ACCuCCU-CCUCGGACUC- -5'
10628 5' -56.9 NC_002702.1 + 9576 0.69 0.287732
Target:  5'- gGAGcgGGAGggGGAGGAGGGGgagGGGg -3'
miRNA:   3'- -UUCa-CCUCuaCCUCCUCCUCggaCUC- -5'
10628 5' -56.9 NC_002702.1 + 28321 0.68 0.319222
Target:  5'- gAAGUGGAcuGggGGAGGGGGAcuaacuGCCaGGGu -3'
miRNA:   3'- -UUCACCU--CuaCCUCCUCCU------CGGaCUC- -5'
10628 5' -56.9 NC_002702.1 + 19018 0.66 0.408867
Target:  5'- gAGGUGGA--UGcGAuGGAGGAGCCUa-- -3'
miRNA:   3'- -UUCACCUcuAC-CU-CCUCCUCGGAcuc -5'
10628 5' -56.9 NC_002702.1 + 29389 0.66 0.408867
Target:  5'- uGAGUGGAGc--GAGGAuguaauuuaucuGGAGCCcgGAGa -3'
miRNA:   3'- -UUCACCUCuacCUCCU------------CCUCGGa-CUC- -5'
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home



TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.