Results 1 - 6 of 6 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
1063 | 3' | -55 | NC_000929.1 | + | 6976 | 0.69 | 0.406337 |
Target: 5'- ---cACuGCUGGCGGGGaccaguuuAUGGCGGa -3' miRNA: 3'- uuauUGcCGACCGCCCCau------UGUCGCC- -5' |
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1063 | 3' | -55 | NC_000929.1 | + | 14514 | 0.68 | 0.466511 |
Target: 5'- ---cACGG-UGGCGuGGUGGCAGCGc -3' miRNA: 3'- uuauUGCCgACCGCcCCAUUGUCGCc -5' |
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1063 | 3' | -55 | NC_000929.1 | + | 20321 | 0.66 | 0.609789 |
Target: 5'- --gGGgGGCUGGaCGuucuGGGUGugGGCGa -3' miRNA: 3'- uuaUUgCCGACC-GC----CCCAUugUCGCc -5' |
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1063 | 3' | -55 | NC_000929.1 | + | 25399 | 0.66 | 0.609789 |
Target: 5'- ---uACGGgagUGGCGGcGGUcgucguguacggAGCGGCGGa -3' miRNA: 3'- uuauUGCCg--ACCGCC-CCA------------UUGUCGCC- -5' |
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1063 | 3' | -55 | NC_000929.1 | + | 25509 | 1.09 | 0.000578 |
Target: 5'- cAAUAACGGCUGGCGGGGUAACAGCGGg -3' miRNA: 3'- -UUAUUGCCGACCGCCCCAUUGUCGCC- -5' |
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1063 | 3' | -55 | NC_000929.1 | + | 29542 | 0.68 | 0.498278 |
Target: 5'- ----gUGGaUGGUGGGGUGACAGUu- -3' miRNA: 3'- uuauuGCCgACCGCCCCAUUGUCGcc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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