miRNA display CGI


Results 1 - 6 of 6 are showing below:
Show page:



<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1063 3' -55 NC_000929.1 + 6976 0.69 0.406337
Target:  5'- ---cACuGCUGGCGGGGaccaguuuAUGGCGGa -3'
miRNA:   3'- uuauUGcCGACCGCCCCau------UGUCGCC- -5'
1063 3' -55 NC_000929.1 + 29542 0.68 0.498278
Target:  5'- ----gUGGaUGGUGGGGUGACAGUu- -3'
miRNA:   3'- uuauuGCCgACCGCCCCAUUGUCGcc -5'
1063 3' -55 NC_000929.1 + 25399 0.66 0.609789
Target:  5'- ---uACGGgagUGGCGGcGGUcgucguguacggAGCGGCGGa -3'
miRNA:   3'- uuauUGCCg--ACCGCC-CCA------------UUGUCGCC- -5'
1063 3' -55 NC_000929.1 + 20321 0.66 0.609789
Target:  5'- --gGGgGGCUGGaCGuucuGGGUGugGGCGa -3'
miRNA:   3'- uuaUUgCCGACC-GC----CCCAUugUCGCc -5'
1063 3' -55 NC_000929.1 + 25509 1.09 0.000578
Target:  5'- cAAUAACGGCUGGCGGGGUAACAGCGGg -3'
miRNA:   3'- -UUAUUGCCGACCGCCCCAUUGUCGCC- -5'
1063 3' -55 NC_000929.1 + 14514 0.68 0.466511
Target:  5'- ---cACGG-UGGCGuGGUGGCAGCGc -3'
miRNA:   3'- uuauUGCCgACCGCcCCAUUGUCGCc -5'
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home



TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.