Results 1 - 12 of 12 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
1063 | 5' | -59.7 | NC_000929.1 | + | 3812 | 0.66 | 0.410519 |
Target: 5'- gGCCGCUcucCCGcGCccuGCGACG-UCGCCu -3' miRNA: 3'- gCGGCGA---GGCaUG---UGCUGCuGGCGGc -5' |
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1063 | 5' | -59.7 | NC_000929.1 | + | 17542 | 0.66 | 0.410519 |
Target: 5'- uGCCuGUUCCGUGgAUGACaGCagCGCCGc -3' miRNA: 3'- gCGG-CGAGGCAUgUGCUGcUG--GCGGC- -5' |
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1063 | 5' | -59.7 | NC_000929.1 | + | 13111 | 0.67 | 0.383598 |
Target: 5'- gGCCGCaaUGU-CAUGACGGCagcgaaGCCGa -3' miRNA: 3'- gCGGCGagGCAuGUGCUGCUGg-----CGGC- -5' |
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1063 | 5' | -59.7 | NC_000929.1 | + | 18444 | 0.67 | 0.366314 |
Target: 5'- uCGCCGUcaucgaUgCGcUGCugGGCcGCCGCCGu -3' miRNA: 3'- -GCGGCG------AgGC-AUGugCUGcUGGCGGC- -5' |
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1063 | 5' | -59.7 | NC_000929.1 | + | 16007 | 0.67 | 0.349574 |
Target: 5'- aGCgGCUuuGUuCAUGGCGGCUuCCGg -3' miRNA: 3'- gCGgCGAggCAuGUGCUGCUGGcGGC- -5' |
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1063 | 5' | -59.7 | NC_000929.1 | + | 18061 | 0.67 | 0.348751 |
Target: 5'- uGCCGCacugaaugcgcugUCCaUugACGAUGACgGCUGg -3' miRNA: 3'- gCGGCG-------------AGGcAugUGCUGCUGgCGGC- -5' |
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1063 | 5' | -59.7 | NC_000929.1 | + | 12473 | 0.68 | 0.333385 |
Target: 5'- -cCCGUUCCGgucugaaucguUACGCGACGAaCGUCGa -3' miRNA: 3'- gcGGCGAGGC-----------AUGUGCUGCUgGCGGC- -5' |
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1063 | 5' | -59.7 | NC_000929.1 | + | 24429 | 0.68 | 0.3255 |
Target: 5'- uGCUGCUCac-GCugGGCGGCUGCa- -3' miRNA: 3'- gCGGCGAGgcaUGugCUGCUGGCGgc -5' |
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1063 | 5' | -59.7 | NC_000929.1 | + | 19817 | 0.69 | 0.288162 |
Target: 5'- aGCCGUaaCCGgcaGCACGGCGGgUGCUGg -3' miRNA: 3'- gCGGCGa-GGCa--UGUGCUGCUgGCGGC- -5' |
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1063 | 5' | -59.7 | NC_000929.1 | + | 22123 | 0.7 | 0.241048 |
Target: 5'- gCGCCGCUcCCGUugcaccuGCuGCGACagauACCGCCa -3' miRNA: 3'- -GCGGCGA-GGCA-------UG-UGCUGc---UGGCGGc -5' |
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1063 | 5' | -59.7 | NC_000929.1 | + | 13915 | 0.74 | 0.124147 |
Target: 5'- uCGCCGCUCaauaaacaCGUACugGGCGAagacuuugcaCGCCGu -3' miRNA: 3'- -GCGGCGAG--------GCAUGugCUGCUg---------GCGGC- -5' |
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1063 | 5' | -59.7 | NC_000929.1 | + | 25472 | 1.08 | 0.000347 |
Target: 5'- cCGCCGCUCCGUACACGACGACCGCCGc -3' miRNA: 3'- -GCGGCGAGGCAUGUGCUGCUGGCGGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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