miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1063 5' -59.7 NC_000929.1 + 17542 0.66 0.410519
Target:  5'- uGCCuGUUCCGUGgAUGACaGCagCGCCGc -3'
miRNA:   3'- gCGG-CGAGGCAUgUGCUGcUG--GCGGC- -5'
1063 5' -59.7 NC_000929.1 + 3812 0.66 0.410519
Target:  5'- gGCCGCUcucCCGcGCccuGCGACG-UCGCCu -3'
miRNA:   3'- gCGGCGA---GGCaUG---UGCUGCuGGCGGc -5'
1063 5' -59.7 NC_000929.1 + 13111 0.67 0.383598
Target:  5'- gGCCGCaaUGU-CAUGACGGCagcgaaGCCGa -3'
miRNA:   3'- gCGGCGagGCAuGUGCUGCUGg-----CGGC- -5'
1063 5' -59.7 NC_000929.1 + 18444 0.67 0.366314
Target:  5'- uCGCCGUcaucgaUgCGcUGCugGGCcGCCGCCGu -3'
miRNA:   3'- -GCGGCG------AgGC-AUGugCUGcUGGCGGC- -5'
1063 5' -59.7 NC_000929.1 + 16007 0.67 0.349574
Target:  5'- aGCgGCUuuGUuCAUGGCGGCUuCCGg -3'
miRNA:   3'- gCGgCGAggCAuGUGCUGCUGGcGGC- -5'
1063 5' -59.7 NC_000929.1 + 18061 0.67 0.348751
Target:  5'- uGCCGCacugaaugcgcugUCCaUugACGAUGACgGCUGg -3'
miRNA:   3'- gCGGCG-------------AGGcAugUGCUGCUGgCGGC- -5'
1063 5' -59.7 NC_000929.1 + 12473 0.68 0.333385
Target:  5'- -cCCGUUCCGgucugaaucguUACGCGACGAaCGUCGa -3'
miRNA:   3'- gcGGCGAGGC-----------AUGUGCUGCUgGCGGC- -5'
1063 5' -59.7 NC_000929.1 + 24429 0.68 0.3255
Target:  5'- uGCUGCUCac-GCugGGCGGCUGCa- -3'
miRNA:   3'- gCGGCGAGgcaUGugCUGCUGGCGgc -5'
1063 5' -59.7 NC_000929.1 + 19817 0.69 0.288162
Target:  5'- aGCCGUaaCCGgcaGCACGGCGGgUGCUGg -3'
miRNA:   3'- gCGGCGa-GGCa--UGUGCUGCUgGCGGC- -5'
1063 5' -59.7 NC_000929.1 + 22123 0.7 0.241048
Target:  5'- gCGCCGCUcCCGUugcaccuGCuGCGACagauACCGCCa -3'
miRNA:   3'- -GCGGCGA-GGCA-------UG-UGCUGc---UGGCGGc -5'
1063 5' -59.7 NC_000929.1 + 13915 0.74 0.124147
Target:  5'- uCGCCGCUCaauaaacaCGUACugGGCGAagacuuugcaCGCCGu -3'
miRNA:   3'- -GCGGCGAG--------GCAUGugCUGCUg---------GCGGC- -5'
1063 5' -59.7 NC_000929.1 + 25472 1.08 0.000347
Target:  5'- cCGCCGCUCCGUACACGACGACCGCCGc -3'
miRNA:   3'- -GCGGCGAGGCAUGUGCUGCUGGCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.