miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10630 3' -61 NC_002702.1 + 28251 0.66 0.26019
Target:  5'- aUCACccugGCaguuaguCCCCCUCCCCCa- -3'
miRNA:   3'- gAGUGua--CGgagu---GGGGGAGGGGGag -5'
10630 3' -61 NC_002702.1 + 16183 0.67 0.234419
Target:  5'- uUUACc--CCaaCACCCCCUCCCCCg- -3'
miRNA:   3'- gAGUGuacGGa-GUGGGGGAGGGGGag -5'
10630 3' -61 NC_002702.1 + 6429 0.67 0.222357
Target:  5'- -cCGcCAUGCUUC-CCCUCUCCCaCUCu -3'
miRNA:   3'- gaGU-GUACGGAGuGGGGGAGGGgGAG- -5'
10630 3' -61 NC_002702.1 + 22997 0.68 0.194499
Target:  5'- aCUCaACAcGUC-CACCCCCUCCgCCg- -3'
miRNA:   3'- -GAG-UGUaCGGaGUGGGGGAGGgGGag -5'
10630 3' -61 NC_002702.1 + 10391 0.68 0.194499
Target:  5'- -gCGCAggcggGCC-CugCCCCUCCUCgUCu -3'
miRNA:   3'- gaGUGUa----CGGaGugGGGGAGGGGgAG- -5'
10630 3' -61 NC_002702.1 + 22501 0.69 0.177828
Target:  5'- aUCACcuauaaagaAUGCC-CACCCCCUCUCuggggauacugcuaCCUCa -3'
miRNA:   3'- gAGUG---------UACGGaGUGGGGGAGGG--------------GGAG- -5'
10630 3' -61 NC_002702.1 + 22211 0.69 0.165144
Target:  5'- -cCugAUGUaauCUCGCCUggCCUCCCCCUUu -3'
miRNA:   3'- gaGugUACG---GAGUGGG--GGAGGGGGAG- -5'
10630 3' -61 NC_002702.1 + 22274 0.69 0.165144
Target:  5'- -aCACuguUGCCaCACCCCCaUCCCCgUUu -3'
miRNA:   3'- gaGUGu--ACGGaGUGGGGG-AGGGGgAG- -5'
10630 3' -61 NC_002702.1 + 15025 0.7 0.132213
Target:  5'- uUCACGUcCCUCACCUUgaCCUCCUCu -3'
miRNA:   3'- gAGUGUAcGGAGUGGGGgaGGGGGAG- -5'
10630 3' -61 NC_002702.1 + 15191 0.72 0.09677
Target:  5'- --gGCccGCCUaCGcCCCCCUCCCgCCUCa -3'
miRNA:   3'- gagUGuaCGGA-GU-GGGGGAGGG-GGAG- -5'
10630 3' -61 NC_002702.1 + 9531 0.74 0.068424
Target:  5'- uCUCgGCGUcaaGCCUggcCACUCCUUCCCCCUCa -3'
miRNA:   3'- -GAG-UGUA---CGGA---GUGGGGGAGGGGGAG- -5'
10630 3' -61 NC_002702.1 + 9650 1.08 0.000147
Target:  5'- cCUCACAUGCCUCACCCCCUCCCCCUCc -3'
miRNA:   3'- -GAGUGUACGGAGUGGGGGAGGGGGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.