miRNA display CGI


Results 1 - 4 of 4 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10632 3' -57.6 NC_002702.1 + 15363 0.7 0.222258
Target:  5'- -aACGCCagaUGGCCGUCUcCGUCCGGGg -3'
miRNA:   3'- uaUGUGG---ACUGGCGGGaGUAGGCCUg -5'
10632 3' -57.6 NC_002702.1 + 13253 0.69 0.268061
Target:  5'- aGUACACCUGcuCCGCCCcacacgugaCAUCCGuGCu -3'
miRNA:   3'- -UAUGUGGACu-GGCGGGa--------GUAGGCcUG- -5'
10632 3' -57.6 NC_002702.1 + 10771 1.08 0.000317
Target:  5'- uAUACACCUGACCGCCCUCAUCCGGACg -3'
miRNA:   3'- -UAUGUGGACUGGCGGGAGUAGGCCUG- -5'
10632 3' -57.6 NC_002702.1 + 8039 0.69 0.282478
Target:  5'- cUGCGCCUGGCCuCUC-CAUUCGGGa -3'
miRNA:   3'- uAUGUGGACUGGcGGGaGUAGGCCUg -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.