miRNA display CGI


Results 1 - 7 of 7 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10634 3' -55.1 NC_002702.1 + 2928 0.66 0.547359
Target:  5'- gUCAUCgGGUCAaauaUAGGaGGCC-UGCCAg -3'
miRNA:   3'- -AGUGGgUUAGU----AUCCaCCGGuGCGGU- -5'
10634 3' -55.1 NC_002702.1 + 197 0.68 0.448828
Target:  5'- cCACCCAAcaGUGGGUggaaccgaaacgGGCCgccucgcACGCCAc -3'
miRNA:   3'- aGUGGGUUagUAUCCA------------CCGG-------UGCGGU- -5'
10634 3' -55.1 NC_002702.1 + 7573 0.68 0.399975
Target:  5'- -gGCCCAGUgAggggaaaccuGGUGGCCAagagaGCCAc -3'
miRNA:   3'- agUGGGUUAgUau--------CCACCGGUg----CGGU- -5'
10634 3' -55.1 NC_002702.1 + 16782 0.7 0.344989
Target:  5'- aUCACCCcccgaauGUCAaagUAGGUgcuGGCCAUGuCCAg -3'
miRNA:   3'- -AGUGGGu------UAGU---AUCCA---CCGGUGC-GGU- -5'
10634 3' -55.1 NC_002702.1 + 19394 0.7 0.303472
Target:  5'- aCACUCuucUCuUGGGUGGguaCCACGCCAg -3'
miRNA:   3'- aGUGGGuu-AGuAUCCACC---GGUGCGGU- -5'
10634 3' -55.1 NC_002702.1 + 12845 0.74 0.17555
Target:  5'- uUCACCCAgauAUCGUuuuGGcgccgGGCUGCGCCAu -3'
miRNA:   3'- -AGUGGGU---UAGUAu--CCa----CCGGUGCGGU- -5'
10634 3' -55.1 NC_002702.1 + 12669 1 0.0021
Target:  5'- gUCACCC-AUCAUAGGUGGCCACGCCAc -3'
miRNA:   3'- -AGUGGGuUAGUAUCCACCGGUGCGGU- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.