miRNA display CGI


Results 1 - 6 of 6 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10636 3' -57.8 NC_002702.1 + 13350 0.66 0.433151
Target:  5'- aUCAGggGCAggaGCUCCGCCCC-CACc -3'
miRNA:   3'- -GGUCa-UGUggaCGAGGCGGGGuGUGc -5'
10636 3' -57.8 NC_002702.1 + 15205 0.67 0.395104
Target:  5'- ---cUGCGCCUGCgaguagUCCGCCUCACccuggACGa -3'
miRNA:   3'- ggucAUGUGGACG------AGGCGGGGUG-----UGC- -5'
10636 3' -57.8 NC_002702.1 + 12784 0.67 0.395104
Target:  5'- gUCAG-ACACCUcgacGCcguucugCCGCCCCACGg- -3'
miRNA:   3'- -GGUCaUGUGGA----CGa------GGCGGGGUGUgc -5'
10636 3' -57.8 NC_002702.1 + 32515 0.7 0.252431
Target:  5'- -gGGUcACACg-GCUCCGCCCCuuACGu -3'
miRNA:   3'- ggUCA-UGUGgaCGAGGCGGGGugUGC- -5'
10636 3' -57.8 NC_002702.1 + 107 0.7 0.252431
Target:  5'- -gGGUcACACg-GCUCCGCCCCuuACGu -3'
miRNA:   3'- ggUCA-UGUGgaCGAGGCGGGGugUGC- -5'
10636 3' -57.8 NC_002702.1 + 13256 1.1 0.000277
Target:  5'- uCCAGUACACCUGCUCCGCCCCACACGu -3'
miRNA:   3'- -GGUCAUGUGGACGAGGCGGGGUGUGC- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.