miRNA display CGI


Results 1 - 7 of 7 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10637 5' -61.3 NC_002702.1 + 7370 0.69 0.177883
Target:  5'- -aCGUGGaGAUGGGgGGCaGCGGCGg -3'
miRNA:   3'- ccGCACUgCUGCCCgUCGaCGCCGCa -5'
10637 5' -61.3 NC_002702.1 + 13902 0.67 0.257109
Target:  5'- aGCGUG-CG-CGcGGCcagagcccuGCUGCGGCGa -3'
miRNA:   3'- cCGCACuGCuGC-CCGu--------CGACGCCGCa -5'
10637 5' -61.3 NC_002702.1 + 4438 0.66 0.270537
Target:  5'- aGCGUGGCuucuguGACGGuaaaCGGC-GCGGCGUu -3'
miRNA:   3'- cCGCACUG------CUGCCc---GUCGaCGCCGCA- -5'
10637 5' -61.3 NC_002702.1 + 14119 0.66 0.298335
Target:  5'- uGGCGcugcGACGAgGGGCGGagacgaccaccgcCggcGCGGCGg -3'
miRNA:   3'- -CCGCa---CUGCUgCCCGUC-------------Ga--CGCCGCa -5'
10637 5' -61.3 NC_002702.1 + 10424 0.66 0.29173
Target:  5'- uGGcCG-GACGACGaGGCcggaacgggguaGGCUGCgcaGGCGg -3'
miRNA:   3'- -CC-GCaCUGCUGC-CCG------------UCGACG---CCGCa -5'
10637 5' -61.3 NC_002702.1 + 10125 0.68 0.225924
Target:  5'- aGCGUaAUGACGGaGUAGUUGaUGGCGg -3'
miRNA:   3'- cCGCAcUGCUGCC-CGUCGAC-GCCGCa -5'
10637 5' -61.3 NC_002702.1 + 14717 1.08 0.000154
Target:  5'- aGGCGUGACGACGGGCAGCUGCGGCGUc -3'
miRNA:   3'- -CCGCACUGCUGCCCGUCGACGCCGCA- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.