miRNA display CGI


Results 1 - 10 of 10 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10638 5' -52 NC_002702.1 + 15568 1.09 0.001082
Target:  5'- aUGAUCGGAACCAGCGCCGGCAAAAAGc -3'
miRNA:   3'- -ACUAGCCUUGGUCGCGGCCGUUUUUC- -5'
10638 5' -52 NC_002702.1 + 11286 0.69 0.543301
Target:  5'- cGAaCGuGAGCC-GCGCCcuaGGCGGGGAGg -3'
miRNA:   3'- aCUaGC-CUUGGuCGCGG---CCGUUUUUC- -5'
10638 5' -52 NC_002702.1 + 18846 0.68 0.601301
Target:  5'- --cUCGGGGaagagCGGCGCUGGCAAAcccuGAGa -3'
miRNA:   3'- acuAGCCUUg----GUCGCGGCCGUUU----UUC- -5'
10638 5' -52 NC_002702.1 + 15499 0.67 0.660032
Target:  5'- aUGAgCGGAggcuuuuuGCCGGCGCUGGUu----- -3'
miRNA:   3'- -ACUaGCCU--------UGGUCGCGGCCGuuuuuc -5'
10638 5' -52 NC_002702.1 + 14244 0.67 0.664719
Target:  5'- aGAUCGuGGcgccagagaucuaugGCCGGCGCCGGa--GGGGu -3'
miRNA:   3'- aCUAGC-CU---------------UGGUCGCGGCCguuUUUC- -5'
10638 5' -52 NC_002702.1 + 7376 0.67 0.683403
Target:  5'- aGAUgGGGGgCAGCGgCGGUAGu--- -3'
miRNA:   3'- aCUAgCCUUgGUCGCgGCCGUUuuuc -5'
10638 5' -52 NC_002702.1 + 16005 0.67 0.683403
Target:  5'- cGAcCGGuGCCAgauGCGCUGGUGGAAGa -3'
miRNA:   3'- aCUaGCCuUGGU---CGCGGCCGUUUUUc -5'
10638 5' -52 NC_002702.1 + 5786 0.66 0.706551
Target:  5'- -cAUCGGAugCgucaaGGCGCUGGCGu---- -3'
miRNA:   3'- acUAGCCUugG-----UCGCGGCCGUuuuuc -5'
10638 5' -52 NC_002702.1 + 14105 0.66 0.729365
Target:  5'- gGggCGGAgacgACCAcCGCCGGCGc---- -3'
miRNA:   3'- aCuaGCCU----UGGUcGCGGCCGUuuuuc -5'
10638 5' -52 NC_002702.1 + 23165 0.66 0.751737
Target:  5'- -aGUUGGAGgaGGCGgCGGCAGAAu- -3'
miRNA:   3'- acUAGCCUUggUCGCgGCCGUUUUuc -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.