miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10640 3' -51.8 NC_002702.1 + 32469 0.66 0.768825
Target:  5'- ---aCGGGGCGCg--CCcGCCCGCCGg -3'
miRNA:   3'- ccaaGUCUUGUGguaGGaUGGGUGGC- -5'
10640 3' -51.8 NC_002702.1 + 19911 1.13 0.0007
Target:  5'- aGGUUCAGAACACCAUCCUACCCACCGg -3'
miRNA:   3'- -CCAAGUCUUGUGGUAGGAUGGGUGGC- -5'
10640 3' -51.8 NC_002702.1 + 18813 0.66 0.758052
Target:  5'- ----gAGAAgGCCAUCCuUACCCAgCu -3'
miRNA:   3'- ccaagUCUUgUGGUAGG-AUGGGUgGc -5'
10640 3' -51.8 NC_002702.1 + 15918 0.68 0.644642
Target:  5'- aGUUCAGGGCAUCGccUCCggUAUCCACgGc -3'
miRNA:   3'- cCAAGUCUUGUGGU--AGG--AUGGGUGgC- -5'
10640 3' -51.8 NC_002702.1 + 14829 0.66 0.768825
Target:  5'- aGGUUCccccgGGGACgGCCuuucUUUUGCCCGCCa -3'
miRNA:   3'- -CCAAG-----UCUUG-UGGu---AGGAUGGGUGGc -5'
10640 3' -51.8 NC_002702.1 + 13814 0.67 0.724926
Target:  5'- cGUgguGAACGCCAUCg-GCCCugGCCGg -3'
miRNA:   3'- cCAaguCUUGUGGUAGgaUGGG--UGGC- -5'
10640 3' -51.8 NC_002702.1 + 12438 0.68 0.633022
Target:  5'- aGUUCAGAACAgCgAUUUUACCCcCCu -3'
miRNA:   3'- cCAAGUCUUGU-GgUAGGAUGGGuGGc -5'
10640 3' -51.8 NC_002702.1 + 11377 0.68 0.683981
Target:  5'- aGUUUAGcguggccugcaaauuGGCGCUGUCCUcCCCGCCu -3'
miRNA:   3'- cCAAGUC---------------UUGUGGUAGGAuGGGUGGc -5'
10640 3' -51.8 NC_002702.1 + 11351 0.66 0.779441
Target:  5'- --cUCAcuaacCGCCAaaaccgCCUACCCACCGa -3'
miRNA:   3'- ccaAGUcuu--GUGGUa-----GGAUGGGUGGC- -5'
10640 3' -51.8 NC_002702.1 + 10339 0.67 0.690872
Target:  5'- aGGggCAGGGCccGCCugcgcagCCUACCCcguuCCGg -3'
miRNA:   3'- -CCaaGUCUUG--UGGua-----GGAUGGGu---GGC- -5'
10640 3' -51.8 NC_002702.1 + 9288 0.66 0.768825
Target:  5'- gGGUUCaAGAguGgGCCAgagCCUccACCaCACCGu -3'
miRNA:   3'- -CCAAG-UCU--UgUGGUa--GGA--UGG-GUGGC- -5'
10640 3' -51.8 NC_002702.1 + 1076 0.68 0.667831
Target:  5'- aGGUUCGucuUGCuCAUCCUGCuCCGCUGg -3'
miRNA:   3'- -CCAAGUcuuGUG-GUAGGAUG-GGUGGC- -5'
10640 3' -51.8 NC_002702.1 + 153 0.66 0.768825
Target:  5'- ---aCGGGGCGCg--CCcGCCCGCCGg -3'
miRNA:   3'- ccaaGUCUUGUGguaGGaUGGGUGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.