miRNA: 3'- gCUCGAUCCCACGACAgucugUGCCu -5'
miRNA: 3'- gcuCGAU-CCCACGa---CAG--UCUGUGCCU- -5'
miRNA: 3'- gCUCGau-CCCACGACAGuCU--GUGCCu -5'
miRNA: 3'- -GCUCGAUCCCACGACAGUCUGUGCCU- -5'
Results 1 - 4 of 4 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. |
strand
|
Start Position | R_P_ratio# | P value |
| Predicted miRNA align pattern | |||||||
| 10641 | 3' | -55.7 | NC_002702.1 | + | 11776 | 0.7 | 0.31847 |
|
Target: 5'- gGGGCUGGGGUGUUGUaaacaGCGGc -3' miRNA: 3'- gCUCGAUCCCACGACAgucugUGCCu -5' |
|||||||
| 10641 | 3' | -55.7 | NC_002702.1 | + | 16264 | 0.7 | 0.302552 |
|
Target: 5'- --cGCUGuGGGUGCggaaGUCacGGACGCGGGg -3' miRNA: 3'- gcuCGAU-CCCACGa---CAG--UCUGUGCCU- -5' |
|||||||
| 10641 | 3' | -55.7 | NC_002702.1 | + | 14075 | 0.72 | 0.238503 |
|
Target: 5'- gGGGCcgcGGGUGCUGUCuGAguCACGGu -3' miRNA: 3'- gCUCGau-CCCACGACAGuCU--GUGCCu -5' |
|||||||
| 10641 | 3' | -55.7 | NC_002702.1 | + | 20971 | 1.09 | 0.000427 |
|
Target: 5'- aCGAGCUAGGGUGCUGUCAGACACGGAc -3' miRNA: 3'- -GCUCGAUCCCACGACAGUCUGUGCCU- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home