Results 1 - 6 of 6 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
10641 | 5' | -47.7 | NC_002702.1 | + | 16203 | 0.66 | 0.944329 |
Target: 5'- --cCCGCGUCCGUgAcuUCCgcacccACAGc -3' miRNA: 3'- gaaGGUGCAGGCAgUuuAGGau----UGUC- -5' |
|||||||
10641 | 5' | -47.7 | NC_002702.1 | + | 7149 | 0.67 | 0.927106 |
Target: 5'- --aCCACGUCCaccaCAAAUCCUcuGACuGg -3' miRNA: 3'- gaaGGUGCAGGca--GUUUAGGA--UUGuC- -5' |
|||||||
10641 | 5' | -47.7 | NC_002702.1 | + | 1303 | 0.67 | 0.906926 |
Target: 5'- --aCCugGUCUGUCAGAagCaUAAUAGa -3' miRNA: 3'- gaaGGugCAGGCAGUUUagG-AUUGUC- -5' |
|||||||
10641 | 5' | -47.7 | NC_002702.1 | + | 16003 | 0.68 | 0.857992 |
Target: 5'- -cUCCugGUUCGcCAGAUCC--ACGGc -3' miRNA: 3'- gaAGGugCAGGCaGUUUAGGauUGUC- -5' |
|||||||
10641 | 5' | -47.7 | NC_002702.1 | + | 22357 | 0.69 | 0.848801 |
Target: 5'- -gUCCu--UUCGUCAAAUCCUGAcCAGa -3' miRNA: 3'- gaAGGugcAGGCAGUUUAGGAUU-GUC- -5' |
|||||||
10641 | 5' | -47.7 | NC_002702.1 | + | 20934 | 0.94 | 0.03648 |
Target: 5'- cCUUCCACGUCCGUCAAAUCCUcaaagcuccuucugGAUAGa -3' miRNA: 3'- -GAAGGUGCAGGCAGUUUAGGA--------------UUGUC- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home