miRNA: 3'- cGAGCAGuAG-------CUGCUGGUugGUUUCG- -5'
miRNA: 3'- -CGAgCAGUAGCUGCUGgUUGGuUUCG- -5'
miRNA: 3'- -CGAGCAGUAGCUGCUGGUUGGUUUCG- -5'
miRNA: 3'- -CGAGCAGuagCUGCuGGUUGGU-UUCG- -5'
Results 1 - 4 of 4 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position
|
R_P_ratio# | P value |
| Predicted miRNA align pattern | |||||||
| 10642 | 5' | -49.3 | NC_002702.1 | + | 7297 | 0.68 | 0.829136 |
|
Target: 5'- aCUCGUCcUCuguuguaGACGACCA--CAGAGCc -3' miRNA: 3'- cGAGCAGuAG-------CUGCUGGUugGUUUCG- -5' |
|||||||
| 10642 | 5' | -49.3 | NC_002702.1 | + | 21027 | 0.8 | 0.228443 |
|
Target: 5'- gGUUgGUCGUCGAUGACgAGCCuGGGCu -3' miRNA: 3'- -CGAgCAGUAGCUGCUGgUUGGuUUCG- -5' |
|||||||
| 10642 | 5' | -49.3 | NC_002702.1 | + | 21080 | 1.14 | 0.001155 |
|
Target: 5'- gGCUCGUCAUCGACGACCAACCAAAGCc -3' miRNA: 3'- -CGAGCAGUAGCUGCUGGUUGGUUUCG- -5' |
|||||||
| 10642 | 5' | -49.3 | NC_002702.1 | + | 22817 | 0.71 | 0.642365 |
|
Target: 5'- cGCUCGUCca-GGCG-CCGGCCGuGAGUu -3' miRNA: 3'- -CGAGCAGuagCUGCuGGUUGGU-UUCG- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home