Results 1 - 9 of 9 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
|
| Predicted miRNA align pattern | |||||||
| 10648 | 5' | -59 | NC_002702.1 | + | 10044 | 0.66 | 0.382289 |
|
Target: 5'- -cUGAgUCUgACGGAgaaaGUG-GCCGCCa -3' miRNA: 3'- acACUgAGAgUGCCUg---CGCgCGGCGG- -5' |
|||||||
| 10648 | 5' | -59 | NC_002702.1 | + | 13589 | 0.66 | 0.364662 |
|
Target: 5'- --aGGCUCg-GCGG-CGCGCGuCCGUg -3' miRNA: 3'- acaCUGAGagUGCCuGCGCGC-GGCGg -5' |
|||||||
| 10648 | 5' | -59 | NC_002702.1 | + | 23397 | 0.67 | 0.356062 |
|
Target: 5'- --cGACgUCUCuuu--CGCGCGCCGCUa -3' miRNA: 3'- acaCUG-AGAGugccuGCGCGCGGCGG- -5' |
|||||||
| 10648 | 5' | -59 | NC_002702.1 | + | 14017 | 0.67 | 0.347605 |
|
Target: 5'- cGUGACUCagacagcaccCGCGGccccCGcCGCGCCGgCg -3' miRNA: 3'- aCACUGAGa---------GUGCCu---GC-GCGCGGCgG- -5' |
|||||||
| 10648 | 5' | -59 | NC_002702.1 | + | 18779 | 0.67 | 0.331126 |
|
Target: 5'- --gGAUUCUCAgGGuuUGCcaGCGCCGCUc -3' miRNA: 3'- acaCUGAGAGUgCCu-GCG--CGCGGCGG- -5' |
|||||||
| 10648 | 5' | -59 | NC_002702.1 | + | 5785 | 0.67 | 0.323105 |
|
Target: 5'- --gGGCUCUCGCGGugGC-CGUCu-- -3' miRNA: 3'- acaCUGAGAGUGCCugCGcGCGGcgg -5' |
|||||||
| 10648 | 5' | -59 | NC_002702.1 | + | 29513 | 0.67 | 0.315229 |
|
Target: 5'- --aGACUC-CugGGAUGUauacaGUGUCGCCu -3' miRNA: 3'- acaCUGAGaGugCCUGCG-----CGCGGCGG- -5' |
|||||||
| 10648 | 5' | -59 | NC_002702.1 | + | 13747 | 0.79 | 0.049179 |
|
Target: 5'- gGUGAgUCUCggacAUGGAgCGgGCGCCGCCg -3' miRNA: 3'- aCACUgAGAG----UGCCU-GCgCGCGGCGG- -5' |
|||||||
| 10648 | 5' | -59 | NC_002702.1 | + | 13525 | 1.12 | 0.000143 |
|
Target: 5'- gUGUGACUCUCACGGACGCGCGCCGCCg -3' miRNA: 3'- -ACACUGAGAGUGCCUGCGCGCGGCGG- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home