Results 1 - 3 of 3 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
10651 | 3' | -55.3 | NC_002702.1 | + | 15159 | 1.09 | 0.000437 |
Target: 5'- uACUCGCAGGCGCAGACGCAGAGUAAGg -3' miRNA: 3'- -UGAGCGUCCGCGUCUGCGUCUCAUUC- -5' |
|||||||
10651 | 3' | -55.3 | NC_002702.1 | + | 10309 | 0.66 | 0.502982 |
Target: 5'- cGCUgGCAGGCGgagaugauuCAGACGaggAGGGgcAGg -3' miRNA: 3'- -UGAgCGUCCGC---------GUCUGCg--UCUCauUC- -5' |
|||||||
10651 | 3' | -55.3 | NC_002702.1 | + | 31687 | 0.66 | 0.554129 |
Target: 5'- gGCUCGCAuGGCuucauauGCuuggcuaacuaucaGGACGCAGGG-GAGg -3' miRNA: 3'- -UGAGCGU-CCG-------CG--------------UCUGCGUCUCaUUC- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home