Results 1 - 3 of 3 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
10652 | 3' | -57.9 | NC_002702.1 | + | 3038 | 0.67 | 0.37253 |
Target: 5'- gUGg-CCCCGGCuCUGGUGC-GUcCGUa -3' miRNA: 3'- gACagGGGGCCG-GAUCACGuCAaGCG- -5' |
|||||||
10652 | 3' | -57.9 | NC_002702.1 | + | 11352 | 0.7 | 0.217568 |
Target: 5'- gCUGUCCuCCCcGCCUAGggcgcgGCucacGUUCGUg -3' miRNA: 3'- -GACAGG-GGGcCGGAUCa-----CGu---CAAGCG- -5' |
|||||||
10652 | 3' | -57.9 | NC_002702.1 | + | 16500 | 1.1 | 0.000211 |
Target: 5'- cCUGUCCCCCGGCCUAGUGCAGUUCGCc -3' miRNA: 3'- -GACAGGGGGCCGGAUCACGUCAAGCG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home