miRNA display CGI


Results 1 - 6 of 6 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10653 3' -57 NC_002702.1 + 25168 0.66 0.392182
Target:  5'- uGUCGGC-UCUUCCaguugCCAUGGCuagcaCCACAu -3'
miRNA:   3'- -CGGUCGaAGAAGG-----GGUACCG-----GGUGUu -5'
10653 3' -57 NC_002702.1 + 16588 0.66 0.431318
Target:  5'- cCCAGCUUaaaguaggUCUCUGUGGCCUggGCGAa -3'
miRNA:   3'- cGGUCGAAga------AGGGGUACCGGG--UGUU- -5'
10653 3' -57 NC_002702.1 + 102 0.67 0.3735
Target:  5'- gGCgGGCgggCgcgCCCCGUGGCgUGCGAg -3'
miRNA:   3'- -CGgUCGaa-Gaa-GGGGUACCGgGUGUU- -5'
10653 3' -57 NC_002702.1 + 32520 0.67 0.3735
Target:  5'- gGCgGGCgggCgcgCCCCGUGGCgUGCGAg -3'
miRNA:   3'- -CGgUCGaa-Gaa-GGGGUACCGgGUGUU- -5'
10653 3' -57 NC_002702.1 + 18793 0.68 0.321173
Target:  5'- uGCCAGCgccgcUCUUCCCCGagaaGGCCa---- -3'
miRNA:   3'- -CGGUCGa----AGAAGGGGUa---CCGGguguu -5'
10653 3' -57 NC_002702.1 + 18148 1.08 0.000304
Target:  5'- cGCCAGCUUCUUCCCCAUGGCCCACAAc -3'
miRNA:   3'- -CGGUCGAAGAAGGGGUACCGGGUGUU- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.