miRNA display CGI


Results 1 - 6 of 6 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10653 5' -50.9 NC_002702.1 + 8145 0.77 0.228459
Target:  5'- -aCUGGAGGCCAUGgggGAGcucAGCGAg -3'
miRNA:   3'- gaGACCUCCGGUACaa-CUCu--UUGCUg -5'
10653 5' -50.9 NC_002702.1 + 12886 0.69 0.634269
Target:  5'- aUCUGGgugaaAGGCCAUGUUGguguacuucccGGgcAUGACu -3'
miRNA:   3'- gAGACC-----UCCGGUACAAC-----------UCuuUGCUG- -5'
10653 5' -50.9 NC_002702.1 + 16845 0.67 0.728048
Target:  5'- gCUUUGGGGGCCAagggGUUGu-AAGCGGu -3'
miRNA:   3'- -GAGACCUCCGGUa---CAACucUUUGCUg -5'
10653 5' -50.9 NC_002702.1 + 18185 1.12 0.000857
Target:  5'- aCUCUGGAGGCCAUGUUGAGAAACGACa -3'
miRNA:   3'- -GAGACCUCCGGUACAACUCUUUGCUG- -5'
10653 5' -50.9 NC_002702.1 + 19760 0.74 0.324306
Target:  5'- aUCUGGGGGCgGUGUgagcgaaaguacGAGGAAUGAUg -3'
miRNA:   3'- gAGACCUCCGgUACAa-----------CUCUUUGCUG- -5'
10653 5' -50.9 NC_002702.1 + 30461 0.66 0.783493
Target:  5'- gUUUGGAGGCagagggaguUGUUGAGGguGAUGAa -3'
miRNA:   3'- gAGACCUCCGgu-------ACAACUCU--UUGCUg -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.