miRNA display CGI


Results 1 - 4 of 4 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10658 3' -57.2 NC_002702.1 + 23955 1.09 0.000347
Target:  5'- cCACGGAGACGCCCAGGUUAGUGCGGAa -3'
miRNA:   3'- -GUGCCUCUGCGGGUCCAAUCACGCCU- -5'
10658 3' -57.2 NC_002702.1 + 12593 0.66 0.480234
Target:  5'- aGCGGuGACGUUCGGcauGUUGGUGUgaaGGAu -3'
miRNA:   3'- gUGCCuCUGCGGGUC---CAAUCACG---CCU- -5'
10658 3' -57.2 NC_002702.1 + 18333 0.66 0.459605
Target:  5'- aAUGGAGAUGggCAGGUUAGaagccccgGCGGGg -3'
miRNA:   3'- gUGCCUCUGCggGUCCAAUCa-------CGCCU- -5'
10658 3' -57.2 NC_002702.1 + 16286 0.74 0.134012
Target:  5'- cCACGGGGGCGgCgGGGggcaccgcugugGGUGCGGAa -3'
miRNA:   3'- -GUGCCUCUGCgGgUCCaa----------UCACGCCU- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.