miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10658 5' -58.9 NC_002702.1 + 8254 0.66 0.405379
Target:  5'- gGGCagCCGU-CGCUgggGCC-GUGCgAGCCCu -3'
miRNA:   3'- -CCG--GGCGuGCGA---UGGaCAUGgUCGGG- -5'
10658 5' -58.9 NC_002702.1 + 32456 0.66 0.396095
Target:  5'- cGCCuCGCACGCcACggGgcgcGCCcGCCCg -3'
miRNA:   3'- cCGG-GCGUGCGaUGgaCa---UGGuCGGG- -5'
10658 5' -58.9 NC_002702.1 + 166 0.66 0.396095
Target:  5'- cGCCuCGCACGCcACggGgcgcGCCcGCCCg -3'
miRNA:   3'- cCGG-GCGUGCGaUGgaCa---UGGuCGGG- -5'
10658 5' -58.9 NC_002702.1 + 2869 0.67 0.351783
Target:  5'- aGGUUCGCAC-CUGCUUucuaaCAGCCCg -3'
miRNA:   3'- -CCGGGCGUGcGAUGGAcaug-GUCGGG- -5'
10658 5' -58.9 NC_002702.1 + 8367 0.67 0.343352
Target:  5'- uGGCUcugCGCAUGCUuUCUGUGaCGGCUCu -3'
miRNA:   3'- -CCGG---GCGUGCGAuGGACAUgGUCGGG- -5'
10658 5' -58.9 NC_002702.1 + 14670 0.67 0.326932
Target:  5'- uGCCCGUcgucACGCcucgccagGCCgcuaagagggGUGCCAGCgCCg -3'
miRNA:   3'- cCGGGCG----UGCGa-------UGGa---------CAUGGUCG-GG- -5'
10658 5' -58.9 NC_002702.1 + 12148 0.67 0.318943
Target:  5'- aGCCCGCuACcCUcaaacuugagaaACCUGUcccgccGCCAGUCCu -3'
miRNA:   3'- cCGGGCG-UGcGA------------UGGACA------UGGUCGGG- -5'
10658 5' -58.9 NC_002702.1 + 7942 0.68 0.267134
Target:  5'- uGGCCCGCAUcacgACCUGcGCCAGgUUa -3'
miRNA:   3'- -CCGGGCGUGcga-UGGACaUGGUCgGG- -5'
10658 5' -58.9 NC_002702.1 + 16479 0.69 0.252976
Target:  5'- cGGCCaGgACGCcuccgagUACCUGUcccCCGGCCUa -3'
miRNA:   3'- -CCGGgCgUGCG-------AUGGACAu--GGUCGGG- -5'
10658 5' -58.9 NC_002702.1 + 13948 0.7 0.199728
Target:  5'- uGGCCgcgCGCACGCU-CCUGgagGCCgagcgaauGGCCa -3'
miRNA:   3'- -CCGG---GCGUGCGAuGGACa--UGG--------UCGGg -5'
10658 5' -58.9 NC_002702.1 + 6634 0.71 0.174299
Target:  5'- uGGCCgCGCAgGUgAUUUGUcACCAGUCCa -3'
miRNA:   3'- -CCGG-GCGUgCGaUGGACA-UGGUCGGG- -5'
10658 5' -58.9 NC_002702.1 + 10346 0.75 0.099288
Target:  5'- gGGCCCGCcuGCGCaGCCUaccccGUuCCGGCCUc -3'
miRNA:   3'- -CCGGGCG--UGCGaUGGA-----CAuGGUCGGG- -5'
10658 5' -58.9 NC_002702.1 + 23993 1.14 9.9e-05
Target:  5'- uGGCCCGCACGCUACCUGUACCAGCCCa -3'
miRNA:   3'- -CCGGGCGUGCGAUGGACAUGGUCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.