miRNA display CGI


Results 1 - 4 of 4 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10659 3' -55.6 NC_002702.1 + 25238 0.66 0.547788
Target:  5'- cUACUCCAGCgaacaaucuacaaCCGaACAUCCAA-CCa -3'
miRNA:   3'- aGUGAGGUCGa------------GGC-UGUAGGUUcGGc -5'
10659 3' -55.6 NC_002702.1 + 2962 0.66 0.541109
Target:  5'- cCGCUCCGGagacuaUCgGAUAcggacgcaCCAAGCCGg -3'
miRNA:   3'- aGUGAGGUCg-----AGgCUGUa-------GGUUCGGC- -5'
10659 3' -55.6 NC_002702.1 + 16143 0.71 0.277679
Target:  5'- aCACUCUccacaguAGCgCCGACGcUCGAGCCGg -3'
miRNA:   3'- aGUGAGG-------UCGaGGCUGUaGGUUCGGC- -5'
10659 3' -55.6 NC_002702.1 + 31995 1.09 0.000478
Target:  5'- aUCACUCCAGCUCCGACAUCCAAGCCGc -3'
miRNA:   3'- -AGUGAGGUCGAGGCUGUAGGUUCGGC- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.