miRNA display CGI


Results 1 - 5 of 5 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10659 5' -54 NC_002702.1 + 8003 0.68 0.497191
Target:  5'- cGCAGGUUguggUGGAgauaauucaGCGUGGuGGCUAUGUg -3'
miRNA:   3'- uCGUUCAG----GCCU---------UGCGCC-UCGAUACG- -5'
10659 5' -54 NC_002702.1 + 32265 0.68 0.508118
Target:  5'- cGGCGAGUCuCGaaucGAAUGUGGAGagaaCUGUGUc -3'
miRNA:   3'- -UCGUUCAG-GC----CUUGCGCCUC----GAUACG- -5'
10659 5' -54 NC_002702.1 + 15281 0.68 0.519146
Target:  5'- uGGCAgacgacggGGUCUGGuGgGCGGAGCcugagGCg -3'
miRNA:   3'- -UCGU--------UCAGGCCuUgCGCCUCGaua--CG- -5'
10659 5' -54 NC_002702.1 + 10416 0.69 0.434072
Target:  5'- cGaCGAGgCCGGAACGgGGuaGGCUGcGCa -3'
miRNA:   3'- uC-GUUCaGGCCUUGCgCC--UCGAUaCG- -5'
10659 5' -54 NC_002702.1 + 32029 1.13 0.000351
Target:  5'- cAGCAAGUCCGGAACGCGGAGCUAUGCg -3'
miRNA:   3'- -UCGUUCAGGCCUUGCGCCUCGAUACG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.