Results 1 - 6 of 6 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
1066 | 3' | -63.6 | NC_000929.1 | + | 27428 | 1.06 | 0.000127 |
Target: 5'- cAGCGCCGCCCCCAGCAUGGCAGUGGUu -3' miRNA: 3'- -UCGCGGCGGGGGUCGUACCGUCACCA- -5' |
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1066 | 3' | -63.6 | NC_000929.1 | + | 26945 | 0.75 | 0.043941 |
Target: 5'- cAGCGCC-CCCaucagcgaggaggCCAGCAUGGCAGgcUGGUu -3' miRNA: 3'- -UCGCGGcGGG-------------GGUCGUACCGUC--ACCA- -5' |
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1066 | 3' | -63.6 | NC_000929.1 | + | 18422 | 0.71 | 0.08289 |
Target: 5'- gGGcCGCCGCCgUCCAGCGUGG--GUGGa -3' miRNA: 3'- -UC-GCGGCGG-GGGUCGUACCguCACCa -5' |
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1066 | 3' | -63.6 | NC_000929.1 | + | 27130 | 0.69 | 0.122822 |
Target: 5'- uGCGCCGCUgCCAGCAUGacGUAGUu-- -3' miRNA: 3'- uCGCGGCGGgGGUCGUAC--CGUCAcca -5' |
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1066 | 3' | -63.6 | NC_000929.1 | + | 22904 | 0.66 | 0.205609 |
Target: 5'- cAGCGaauaaCGCagauaaCUCAGCGUGGCGaUGGUa -3' miRNA: 3'- -UCGCg----GCGg-----GGGUCGUACCGUcACCA- -5' |
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1066 | 3' | -63.6 | NC_000929.1 | + | 24367 | 0.66 | 0.195012 |
Target: 5'- uGGUGCaGCCgCCCAGCGUGaGCAGc--- -3' miRNA: 3'- -UCGCGgCGG-GGGUCGUAC-CGUCacca -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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