miRNA display CGI


Results 1 - 9 of 9 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1066 5' -50.6 NC_000929.1 + 31016 0.68 0.747701
Target:  5'- uGAUGCGCgg-CAAAUGCUGcGGGaGCGu -3'
miRNA:   3'- cCUGUGUGaaaGUUUAUGGC-CCC-CGC- -5'
1066 5' -50.6 NC_000929.1 + 29510 0.67 0.820582
Target:  5'- uGACACGCUgccggauggUUCAGAUgaucGCCGuggaugguGGGGUGa -3'
miRNA:   3'- cCUGUGUGA---------AAGUUUA----UGGC--------CCCCGC- -5'
1066 5' -50.6 NC_000929.1 + 27390 1.12 0.001277
Target:  5'- cGGACACACUUUCAAAUACCGGGGGCGu -3'
miRNA:   3'- -CCUGUGUGAAAGUUUAUGGCCCCCGC- -5'
1066 5' -50.6 NC_000929.1 + 27365 0.66 0.848755
Target:  5'- -aAC-CACUgcCA--UGCUGGGGGCGg -3'
miRNA:   3'- ccUGuGUGAaaGUuuAUGGCCCCCGC- -5'
1066 5' -50.6 NC_000929.1 + 23914 0.66 0.848755
Target:  5'- cGGCAuCGCUgacaCAAGaa-CGGGGGCGa -3'
miRNA:   3'- cCUGU-GUGAaa--GUUUaugGCCCCCGC- -5'
1066 5' -50.6 NC_000929.1 + 18672 0.77 0.282704
Target:  5'- uGGACACGCUggaaauuAAUGCCGGGaaaguGGCGg -3'
miRNA:   3'- -CCUGUGUGAaagu---UUAUGGCCC-----CCGC- -5'
1066 5' -50.6 NC_000929.1 + 14961 0.68 0.779986
Target:  5'- gGGGCugGCUgggaaaaugCGcGUGCCGGuGGCGc -3'
miRNA:   3'- -CCUGugUGAaa-------GUuUAUGGCCcCCGC- -5'
1066 5' -50.6 NC_000929.1 + 7607 0.68 0.73666
Target:  5'- aGGGCACuCUUUCAGAUAUucaGGGGa-- -3'
miRNA:   3'- -CCUGUGuGAAAGUUUAUGg--CCCCcgc -5'
1066 5' -50.6 NC_000929.1 + 610 0.67 0.820582
Target:  5'- aGGCACugaaACUUUUAAGUAaaGGGGGg- -3'
miRNA:   3'- cCUGUG----UGAAAGUUUAUggCCCCCgc -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.