miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10660 3' -55.4 NC_002702.1 + 13759 0.66 0.580944
Target:  5'- uCACCagcaccGGGUGagucucGGACaUGGAGCGGGCg -3'
miRNA:   3'- -GUGGgua---CCCAC------CUUG-GCUUUGCCCG- -5'
10660 3' -55.4 NC_002702.1 + 24015 0.66 0.569714
Target:  5'- aGCCCAUGGGUGc-GCCGcAAACaGuGGa -3'
miRNA:   3'- gUGGGUACCCACcuUGGC-UUUG-C-CCg -5'
10660 3' -55.4 NC_002702.1 + 148 0.67 0.518881
Target:  5'- cCACCCAcuguUGGGUGGuuucuguugaacuuuGGCUGGuauuuuccacAAUGGGUg -3'
miRNA:   3'- -GUGGGU----ACCCACC---------------UUGGCU----------UUGCCCG- -5'
10660 3' -55.4 NC_002702.1 + 19850 0.67 0.503755
Target:  5'- uGCCCgGUGGGUaGGAugguguucugaACCuGAuacuGCGGGUg -3'
miRNA:   3'- gUGGG-UACCCA-CCU-----------UGG-CUu---UGCCCG- -5'
10660 3' -55.4 NC_002702.1 + 8238 0.7 0.365398
Target:  5'- aGCUgGUGGGUGGAACCu---CaGGCu -3'
miRNA:   3'- gUGGgUACCCACCUUGGcuuuGcCCG- -5'
10660 3' -55.4 NC_002702.1 + 10436 0.7 0.347018
Target:  5'- cCGCCCAcucuaUGGccGGAcgacgagGCCGGAACGGGg -3'
miRNA:   3'- -GUGGGU-----ACCcaCCU-------UGGCUUUGCCCg -5'
10660 3' -55.4 NC_002702.1 + 15266 0.72 0.2766
Target:  5'- -uCUgGUGGGcGGAGCCuGAGGCGGGa -3'
miRNA:   3'- guGGgUACCCaCCUUGG-CUUUGCCCg -5'
10660 3' -55.4 NC_002702.1 + 10570 0.73 0.233984
Target:  5'- aGCCCAuuccacgucguuguUGGGuUGGGACUGAAACuuGGCa -3'
miRNA:   3'- gUGGGU--------------ACCC-ACCUUGGCUUUGc-CCG- -5'
10660 3' -55.4 NC_002702.1 + 24059 0.74 0.200313
Target:  5'- gCACCCAUGGGcUGGuACaGGuagcguGCGGGCc -3'
miRNA:   3'- -GUGGGUACCC-ACCuUGgCUu-----UGCCCG- -5'
10660 3' -55.4 NC_002702.1 + 197 1.02 0.001752
Target:  5'- cCACCCAacagUGGGUGGAACCGAAACGGGCc -3'
miRNA:   3'- -GUGGGU----ACCCACCUUGGCUUUGCCCG- -5'
10660 3' -55.4 NC_002702.1 + 32429 1.1 0.000437
Target:  5'- uCACCCAUGGGUGGAACCGAAACGGGCc -3'
miRNA:   3'- -GUGGGUACCCACCUUGGCUUUGCCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.