Results 1 - 11 of 11 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
10660 | 3' | -55.4 | NC_002702.1 | + | 13759 | 0.66 | 0.580944 |
Target: 5'- uCACCagcaccGGGUGagucucGGACaUGGAGCGGGCg -3' miRNA: 3'- -GUGGgua---CCCAC------CUUG-GCUUUGCCCG- -5' |
|||||||
10660 | 3' | -55.4 | NC_002702.1 | + | 24015 | 0.66 | 0.569714 |
Target: 5'- aGCCCAUGGGUGc-GCCGcAAACaGuGGa -3' miRNA: 3'- gUGGGUACCCACcuUGGC-UUUG-C-CCg -5' |
|||||||
10660 | 3' | -55.4 | NC_002702.1 | + | 148 | 0.67 | 0.518881 |
Target: 5'- cCACCCAcuguUGGGUGGuuucuguugaacuuuGGCUGGuauuuuccacAAUGGGUg -3' miRNA: 3'- -GUGGGU----ACCCACC---------------UUGGCU----------UUGCCCG- -5' |
|||||||
10660 | 3' | -55.4 | NC_002702.1 | + | 19850 | 0.67 | 0.503755 |
Target: 5'- uGCCCgGUGGGUaGGAugguguucugaACCuGAuacuGCGGGUg -3' miRNA: 3'- gUGGG-UACCCA-CCU-----------UGG-CUu---UGCCCG- -5' |
|||||||
10660 | 3' | -55.4 | NC_002702.1 | + | 8238 | 0.7 | 0.365398 |
Target: 5'- aGCUgGUGGGUGGAACCu---CaGGCu -3' miRNA: 3'- gUGGgUACCCACCUUGGcuuuGcCCG- -5' |
|||||||
10660 | 3' | -55.4 | NC_002702.1 | + | 10436 | 0.7 | 0.347018 |
Target: 5'- cCGCCCAcucuaUGGccGGAcgacgagGCCGGAACGGGg -3' miRNA: 3'- -GUGGGU-----ACCcaCCU-------UGGCUUUGCCCg -5' |
|||||||
10660 | 3' | -55.4 | NC_002702.1 | + | 15266 | 0.72 | 0.2766 |
Target: 5'- -uCUgGUGGGcGGAGCCuGAGGCGGGa -3' miRNA: 3'- guGGgUACCCaCCUUGG-CUUUGCCCg -5' |
|||||||
10660 | 3' | -55.4 | NC_002702.1 | + | 10570 | 0.73 | 0.233984 |
Target: 5'- aGCCCAuuccacgucguuguUGGGuUGGGACUGAAACuuGGCa -3' miRNA: 3'- gUGGGU--------------ACCC-ACCUUGGCUUUGc-CCG- -5' |
|||||||
10660 | 3' | -55.4 | NC_002702.1 | + | 24059 | 0.74 | 0.200313 |
Target: 5'- gCACCCAUGGGcUGGuACaGGuagcguGCGGGCc -3' miRNA: 3'- -GUGGGUACCC-ACCuUGgCUu-----UGCCCG- -5' |
|||||||
10660 | 3' | -55.4 | NC_002702.1 | + | 197 | 1.02 | 0.001752 |
Target: 5'- cCACCCAacagUGGGUGGAACCGAAACGGGCc -3' miRNA: 3'- -GUGGGU----ACCCACCUUGGCUUUGCCCG- -5' |
|||||||
10660 | 3' | -55.4 | NC_002702.1 | + | 32429 | 1.1 | 0.000437 |
Target: 5'- uCACCCAUGGGUGGAACCGAAACGGGCc -3' miRNA: 3'- -GUGGGUACCCACCUUGGCUUUGCCCG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home