miRNA display CGI


Results 1 - 6 of 6 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1067 3' -55 NC_000929.1 + 12800 0.66 0.646566
Target:  5'- gCGGAUuucuuUCUc-GCgCCGGUGGCugGa -3'
miRNA:   3'- -GCCUAuuu--AGGcaCG-GGCCACCGugC- -5'
1067 3' -55 NC_000929.1 + 14176 0.68 0.502518
Target:  5'- -aGAUAAccgCCGUuaCCGGUGGCAUc -3'
miRNA:   3'- gcCUAUUua-GGCAcgGGCCACCGUGc -5'
1067 3' -55 NC_000929.1 + 14970 0.68 0.524003
Target:  5'- uGGGaAAAUgCgCGUG-CCGGUGGCGCu -3'
miRNA:   3'- gCCUaUUUA-G-GCACgGGCCACCGUGc -5'
1067 3' -55 NC_000929.1 + 15305 0.67 0.556853
Target:  5'- uGGAUAucgggcgaCGUG-CCGGUGGCAUu -3'
miRNA:   3'- gCCUAUuuag----GCACgGGCCACCGUGc -5'
1067 3' -55 NC_000929.1 + 27766 0.65 0.657826
Target:  5'- gGGGUGAa--CGUGCCaccgGGCACGg -3'
miRNA:   3'- gCCUAUUuagGCACGGgccaCCGUGC- -5'
1067 3' -55 NC_000929.1 + 27835 1.09 0.000727
Target:  5'- cCGGAUAAAUCCGUGCCCGGUGGCACGu -3'
miRNA:   3'- -GCCUAUUUAGGCACGGGCCACCGUGC- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.