miRNA display CGI


Results 1 - 16 of 16 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10687 3' -49.9 NC_002786.1 + 1067 0.66 0.330429
Target:  5'- cUGAGuCCGGa-CGAAGCCGGCGgGGUc -3'
miRNA:   3'- -AUUUuGGUCgcGUUUCGGUUGCgUCG- -5'
10687 3' -49.9 NC_002786.1 + 1805 0.66 0.330429
Target:  5'- -cGAACCAGCcCucGAGCCGuCGCccccAGCg -3'
miRNA:   3'- auUUUGGUCGcGu-UUCGGUuGCG----UCG- -5'
10687 3' -49.9 NC_002786.1 + 43 0.66 0.32048
Target:  5'- -uGGACgAGCG-AAAGCUggUGCAGa -3'
miRNA:   3'- auUUUGgUCGCgUUUCGGuuGCGUCg -5'
10687 3' -49.9 NC_002786.1 + 4394 0.66 0.30126
Target:  5'- cAAGACgCAGCaUAAGGUCAACGagGGCu -3'
miRNA:   3'- aUUUUG-GUCGcGUUUCGGUUGCg-UCG- -5'
10687 3' -49.9 NC_002786.1 + 4093 0.66 0.291989
Target:  5'- -uGAAgCGGCGCAAggaGGCuCGACGUcuGCg -3'
miRNA:   3'- auUUUgGUCGCGUU---UCG-GUUGCGu-CG- -5'
10687 3' -49.9 NC_002786.1 + 3714 0.67 0.25631
Target:  5'- ---cGCgAGCGCGAagaGGCCGAgcaaugcCGUAGCc -3'
miRNA:   3'- auuuUGgUCGCGUU---UCGGUU-------GCGUCG- -5'
10687 3' -49.9 NC_002786.1 + 3652 0.68 0.240241
Target:  5'- -cGAGCCGuucucuuGCGCGGAGCUGGCuaCGGCa -3'
miRNA:   3'- auUUUGGU-------CGCGUUUCGGUUGc-GUCG- -5'
10687 3' -49.9 NC_002786.1 + 1210 0.69 0.204413
Target:  5'- cGAAGCCAGUGgGAcaGGCgAGCGaagGGCg -3'
miRNA:   3'- aUUUUGGUCGCgUU--UCGgUUGCg--UCG- -5'
10687 3' -49.9 NC_002786.1 + 1703 0.69 0.197696
Target:  5'- -cAAACCGGCG--GAGCCGACGaggaaGGUc -3'
miRNA:   3'- auUUUGGUCGCguUUCGGUUGCg----UCG- -5'
10687 3' -49.9 NC_002786.1 + 4382 0.69 0.197696
Target:  5'- -cGGACCAGCGCcagucuGGGUCGcUGCGGUu -3'
miRNA:   3'- auUUUGGUCGCGu-----UUCGGUuGCGUCG- -5'
10687 3' -49.9 NC_002786.1 + 714 0.71 0.145487
Target:  5'- -cGAGCCGGaggGCAAcccAGCCGccaacuacACGCAGCc -3'
miRNA:   3'- auUUUGGUCg--CGUU---UCGGU--------UGCGUCG- -5'
10687 3' -49.9 NC_002786.1 + 3507 0.71 0.145487
Target:  5'- ---cACCGGCGaCAAGGCU---GCAGCg -3'
miRNA:   3'- auuuUGGUCGC-GUUUCGGuugCGUCG- -5'
10687 3' -49.9 NC_002786.1 + 5027 0.71 0.131085
Target:  5'- ---cACCGGU--AAAGCCGACGUAGUa -3'
miRNA:   3'- auuuUGGUCGcgUUUCGGUUGCGUCG- -5'
10687 3' -49.9 NC_002786.1 + 1954 0.72 0.113927
Target:  5'- cGGAGCCcGCGCAGcugcacggcgGGCgCGACGaCGGCg -3'
miRNA:   3'- aUUUUGGuCGCGUU----------UCG-GUUGC-GUCG- -5'
10687 3' -49.9 NC_002786.1 + 782 0.78 0.037158
Target:  5'- cUGGAGCCAGuCG-AGGGCCgAACGCGGCu -3'
miRNA:   3'- -AUUUUGGUC-GCgUUUCGG-UUGCGUCG- -5'
10687 3' -49.9 NC_002786.1 + 1606 1.1 0.000098
Target:  5'- gUAAAACCAGCGCAAAGCCAACGCAGCc -3'
miRNA:   3'- -AUUUUGGUCGCGUUUCGGUUGCGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.