Results 1 - 15 of 15 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
1069 | 3' | -55.5 | NC_000929.1 | + | 31046 | 0.71 | 0.269175 |
Target: 5'- cGCAguGGCAAUCAcGuCGCUgauggcCUGCGCc -3' miRNA: 3'- aUGUguCCGUUAGU-C-GCGGa-----GACGCG- -5' |
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1069 | 3' | -55.5 | NC_000929.1 | + | 30977 | 0.73 | 0.204834 |
Target: 5'- gGCGCAGGCcAUCAGCgacgugauuGCCaCUGCGg -3' miRNA: 3'- aUGUGUCCGuUAGUCG---------CGGaGACGCg -5' |
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1069 | 3' | -55.5 | NC_000929.1 | + | 29053 | 1.09 | 0.000434 |
Target: 5'- cUACACAGGCAAUCAGCGCCUCUGCGCc -3' miRNA: 3'- -AUGUGUCCGUUAGUCGCGGAGACGCG- -5' |
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1069 | 3' | -55.5 | NC_000929.1 | + | 28432 | 0.74 | 0.183065 |
Target: 5'- aUGCACAGGCcc---GCGCC-CUGCGUg -3' miRNA: 3'- -AUGUGUCCGuuaguCGCGGaGACGCG- -5' |
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1069 | 3' | -55.5 | NC_000929.1 | + | 18802 | 0.7 | 0.299936 |
Target: 5'- gGCACAGGCGAcugcacaaagcgccaCAGCcaGCCUgaGCGCc -3' miRNA: 3'- aUGUGUCCGUUa--------------GUCG--CGGAgaCGCG- -5' |
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1069 | 3' | -55.5 | NC_000929.1 | + | 18717 | 0.66 | 0.518553 |
Target: 5'- aGCGugucCAGcGCGGUCAGUGCCgCUGuUGCc -3' miRNA: 3'- aUGU----GUC-CGUUAGUCGCGGaGAC-GCG- -5' |
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1069 | 3' | -55.5 | NC_000929.1 | + | 16521 | 0.67 | 0.443982 |
Target: 5'- -gUACGGGUAcaaAUCGGCGgUauucaucaUCUGCGCa -3' miRNA: 3'- auGUGUCCGU---UAGUCGCgG--------AGACGCG- -5' |
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1069 | 3' | -55.5 | NC_000929.1 | + | 16227 | 0.69 | 0.366677 |
Target: 5'- gGCGCGGGCGu---GCGCgUCUGC-Ca -3' miRNA: 3'- aUGUGUCCGUuaguCGCGgAGACGcG- -5' |
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1069 | 3' | -55.5 | NC_000929.1 | + | 15124 | 0.66 | 0.506477 |
Target: 5'- cGCAcCGGGUAuGUCGGCaccaaugGCCUUgUGCGCa -3' miRNA: 3'- aUGU-GUCCGU-UAGUCG-------CGGAG-ACGCG- -5' |
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1069 | 3' | -55.5 | NC_000929.1 | + | 14995 | 0.7 | 0.315088 |
Target: 5'- cUGCAUcaucGCGAUcCGGCGCUguUCUGCGCg -3' miRNA: 3'- -AUGUGuc--CGUUA-GUCGCGG--AGACGCG- -5' |
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1069 | 3' | -55.5 | NC_000929.1 | + | 14875 | 0.66 | 0.50757 |
Target: 5'- gUGCGCuGGC-AUCAcGUGCCggagcgaUGCGCc -3' miRNA: 3'- -AUGUGuCCGuUAGU-CGCGGag-----ACGCG- -5' |
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1069 | 3' | -55.5 | NC_000929.1 | + | 13341 | 0.66 | 0.540791 |
Target: 5'- gAUACAGGCGcuGUCaAGcCGCCcgucuaacCUGCGUg -3' miRNA: 3'- aUGUGUCCGU--UAG-UC-GCGGa-------GACGCG- -5' |
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1069 | 3' | -55.5 | NC_000929.1 | + | 11035 | 0.66 | 0.511952 |
Target: 5'- gGCACAGGCuggaCAGCacccGCCacgauaaccagacgCUGCGCc -3' miRNA: 3'- aUGUGUCCGuua-GUCG----CGGa-------------GACGCG- -5' |
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1069 | 3' | -55.5 | NC_000929.1 | + | 5370 | 0.69 | 0.348853 |
Target: 5'- -uCACGGGCu-UCAGgGUCUgaUGCGCa -3' miRNA: 3'- auGUGUCCGuuAGUCgCGGAg-ACGCG- -5' |
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1069 | 3' | -55.5 | NC_000929.1 | + | 1702 | 0.69 | 0.374901 |
Target: 5'- -cCGCAGGCAAccauuuuUCAGCaagUCUGCGCu -3' miRNA: 3'- auGUGUCCGUU-------AGUCGcggAGACGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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