miRNA display CGI


Results 1 - 20 of 20 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1069 5' -43.8 NC_000929.1 + 894 0.66 0.997684
Target:  5'- --cUGCUGAugguAUGCCUGgaucugUUGCu -3'
miRNA:   3'- cuuGCGACUu---UACGGGCauuaa-AACG- -5'
1069 5' -43.8 NC_000929.1 + 2126 0.66 0.997168
Target:  5'- --uCGCUGcuGUGCCgGUAucagaUGCa -3'
miRNA:   3'- cuuGCGACuuUACGGgCAUuaaa-ACG- -5'
1069 5' -43.8 NC_000929.1 + 6784 0.66 0.997168
Target:  5'- aGAAUGUgcgaacagGGAAUGCCCc--GUUUUGUg -3'
miRNA:   3'- -CUUGCGa-------CUUUACGGGcauUAAAACG- -5'
1069 5' -43.8 NC_000929.1 + 29841 0.66 0.997168
Target:  5'- --uCGCUGAu-UGCCCGUAc------ -3'
miRNA:   3'- cuuGCGACUuuACGGGCAUuaaaacg -5'
1069 5' -43.8 NC_000929.1 + 25747 0.66 0.996995
Target:  5'- gGGGCGCUGGgcuggauggggaaaGGUGCCgGUcg---UGCg -3'
miRNA:   3'- -CUUGCGACU--------------UUACGGgCAuuaaaACG- -5'
1069 5' -43.8 NC_000929.1 + 10098 0.66 0.99656
Target:  5'- aGAACGUcagcaauccccgUGAAcuUGCCCGUAAacaggccgUUGCc -3'
miRNA:   3'- -CUUGCG------------ACUUu-ACGGGCAUUaa------AACG- -5'
1069 5' -43.8 NC_000929.1 + 3993 0.66 0.995848
Target:  5'- aGAACgGUUGAAuuUGCCCGUcuGUUuucccguaUUGCa -3'
miRNA:   3'- -CUUG-CGACUUu-ACGGGCAu-UAA--------AACG- -5'
1069 5' -43.8 NC_000929.1 + 1566 0.67 0.994063
Target:  5'- -cACGCUGGAA-GCCCaUGAUUaUGa -3'
miRNA:   3'- cuUGCGACUUUaCGGGcAUUAAaACg -5'
1069 5' -43.8 NC_000929.1 + 25790 0.67 0.994063
Target:  5'- -cACGuCUGGGggGCCCgGUAAUggggGCa -3'
miRNA:   3'- cuUGC-GACUUuaCGGG-CAUUAaaa-CG- -5'
1069 5' -43.8 NC_000929.1 + 20448 0.68 0.990278
Target:  5'- cGGCGCUGggGgaaCCgGUGAgcagUGCg -3'
miRNA:   3'- cUUGCGACuuUac-GGgCAUUaaa-ACG- -5'
1069 5' -43.8 NC_000929.1 + 1790 0.68 0.982319
Target:  5'- gGAGCGCUGAccugguAAUGCCC-------UGCa -3'
miRNA:   3'- -CUUGCGACU------UUACGGGcauuaaaACG- -5'
1069 5' -43.8 NC_000929.1 + 11768 0.69 0.977288
Target:  5'- --cCGuCUGGgcGAUGCgUCGUAGUUUUGCc -3'
miRNA:   3'- cuuGC-GACU--UUACG-GGCAUUAAAACG- -5'
1069 5' -43.8 NC_000929.1 + 10860 0.69 0.974252
Target:  5'- gGAGCGCgUGAccaGAUgGCCCGcUGGgugUUUGCc -3'
miRNA:   3'- -CUUGCG-ACU---UUA-CGGGC-AUUa--AAACG- -5'
1069 5' -43.8 NC_000929.1 + 23421 0.7 0.959147
Target:  5'- uGGAUGCUGGcgAAUGCCUGgcAg---GCg -3'
miRNA:   3'- -CUUGCGACU--UUACGGGCauUaaaaCG- -5'
1069 5' -43.8 NC_000929.1 + 13190 0.71 0.926624
Target:  5'- uGGCGCUGGAAUacaucgccGCCUGUGcccugUUUGCc -3'
miRNA:   3'- cUUGCGACUUUA--------CGGGCAUua---AAACG- -5'
1069 5' -43.8 NC_000929.1 + 9608 0.71 0.925976
Target:  5'- -uGCGCUGAuaaugagcugccgGGUGCCUGaacAUUUUGCc -3'
miRNA:   3'- cuUGCGACU-------------UUACGGGCau-UAAAACG- -5'
1069 5' -43.8 NC_000929.1 + 28997 0.72 0.897984
Target:  5'- aGGCGCUGAu-UGCCUGUGuag--GCg -3'
miRNA:   3'- cUUGCGACUuuACGGGCAUuaaaaCG- -5'
1069 5' -43.8 NC_000929.1 + 22637 0.73 0.872935
Target:  5'- aGACGCUGAcguUGCCCGgaagAAUgccgccUGCg -3'
miRNA:   3'- cUUGCGACUuu-ACGGGCa---UUAaa----ACG- -5'
1069 5' -43.8 NC_000929.1 + 36261 0.77 0.68748
Target:  5'- ---aGCUGAug-GCCCGUGAUUcagagUUGCg -3'
miRNA:   3'- cuugCGACUuuaCGGGCAUUAA-----AACG- -5'
1069 5' -43.8 NC_000929.1 + 29018 1.15 0.004027
Target:  5'- gGAACGCUGAAAUGCCCGUAAUUUUGCa -3'
miRNA:   3'- -CUUGCGACUUUACGGGCAUUAAAACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.