Results 21 - 26 of 26 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
10698 | 3' | -55.5 | NC_002794.1 | + | 189023 | 0.67 | 0.936489 |
Target: 5'- aGGCCAGGaGccGCUCGaccgccagcggcggGCUGCGCGucGCGu -3' miRNA: 3'- -CUGGUCC-C--UGAGCa-------------UGACGCGCu-UGC- -5' |
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10698 | 3' | -55.5 | NC_002794.1 | + | 111867 | 0.67 | 0.939319 |
Target: 5'- cGCCAGGGcCUUGUAgcGCGCGGu-- -3' miRNA: 3'- cUGGUCCCuGAGCAUgaCGCGCUugc -5' |
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10698 | 3' | -55.5 | NC_002794.1 | + | 97061 | 0.67 | 0.918888 |
Target: 5'- --gCAGGGuacggacaUCGUGCgcuucGCGCGGACGa -3' miRNA: 3'- cugGUCCCug------AGCAUGa----CGCGCUUGC- -5' |
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10698 | 3' | -55.5 | NC_002794.1 | + | 115958 | 0.68 | 0.907291 |
Target: 5'- cGCCGGGGAC-CGUGg-GgGgGAGCGg -3' miRNA: 3'- cUGGUCCCUGaGCAUgaCgCgCUUGC- -5' |
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10698 | 3' | -55.5 | NC_002794.1 | + | 133268 | 0.68 | 0.907291 |
Target: 5'- cACCGGGaGACUCGcg-UGUGCGcGCGg -3' miRNA: 3'- cUGGUCC-CUGAGCaugACGCGCuUGC- -5' |
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10698 | 3' | -55.5 | NC_002794.1 | + | 195365 | 1.09 | 0.004539 |
Target: 5'- gGACCAGGGACUCGUACUGCGCGAACGa -3' miRNA: 3'- -CUGGUCCCUGAGCAUGACGCGCUUGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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