Results 21 - 40 of 95 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
10698 | 5' | -59.1 | NC_002794.1 | + | 182996 | 0.66 | 0.855439 |
Target: 5'- cGGCGcuucgCCgcggGcGCCcCGCGCGCG-CCCGc -3' miRNA: 3'- -CCGUa----GGa---C-CGGuGUGUGCGCaGGGC- -5' |
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10698 | 5' | -59.1 | NC_002794.1 | + | 93460 | 0.66 | 0.855439 |
Target: 5'- cGGCGUCCc-GCCGcCGCACGUGgCCa- -3' miRNA: 3'- -CCGUAGGacCGGU-GUGUGCGCaGGgc -5' |
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10698 | 5' | -59.1 | NC_002794.1 | + | 78681 | 0.66 | 0.840183 |
Target: 5'- cGGCcgCC-GGCCGCAUGUGCGg-CCGa -3' miRNA: 3'- -CCGuaGGaCCGGUGUGUGCGCagGGC- -5' |
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10698 | 5' | -59.1 | NC_002794.1 | + | 119107 | 0.66 | 0.847137 |
Target: 5'- gGGCGUCCagaUcggggacgcagaaGGCCugGCAgGCGUUCgGg -3' miRNA: 3'- -CCGUAGG---A-------------CCGGugUGUgCGCAGGgC- -5' |
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10698 | 5' | -59.1 | NC_002794.1 | + | 57454 | 0.66 | 0.847901 |
Target: 5'- aGCA-CCUGcuCCACGCGCuGCG-CCCGc -3' miRNA: 3'- cCGUaGGACc-GGUGUGUG-CGCaGGGC- -5' |
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10698 | 5' | -59.1 | NC_002794.1 | + | 125039 | 0.66 | 0.855439 |
Target: 5'- cGGCGcagaUCCUGGU---GCACGCGaaCCCGc -3' miRNA: 3'- -CCGU----AGGACCGgugUGUGCGCa-GGGC- -5' |
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10698 | 5' | -59.1 | NC_002794.1 | + | 12391 | 0.66 | 0.847901 |
Target: 5'- cGCucgCCUGGCCGacaacCGCACGCGga-CGg -3' miRNA: 3'- cCGua-GGACCGGU-----GUGUGCGCaggGC- -5' |
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10698 | 5' | -59.1 | NC_002794.1 | + | 182025 | 0.67 | 0.790472 |
Target: 5'- cGGCGUCCgGGCCGCcgGCGaccagaccagGUCCUGc -3' miRNA: 3'- -CCGUAGGaCCGGUGugUGCg---------CAGGGC- -5' |
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10698 | 5' | -59.1 | NC_002794.1 | + | 36589 | 0.67 | 0.799127 |
Target: 5'- aGGCgGUCCgcguGCCACACGaGCGccCCCGa -3' miRNA: 3'- -CCG-UAGGac--CGGUGUGUgCGCa-GGGC- -5' |
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10698 | 5' | -59.1 | NC_002794.1 | + | 37045 | 0.67 | 0.799127 |
Target: 5'- gGGUGUCCUGcCCGuCGCGCuCGUCCuCGu -3' miRNA: 3'- -CCGUAGGACcGGU-GUGUGcGCAGG-GC- -5' |
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10698 | 5' | -59.1 | NC_002794.1 | + | 12653 | 0.67 | 0.799127 |
Target: 5'- gGGUA-CCgcaccGCCACGCugGUGaUCCCGc -3' miRNA: 3'- -CCGUaGGac---CGGUGUGugCGC-AGGGC- -5' |
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10698 | 5' | -59.1 | NC_002794.1 | + | 10987 | 0.67 | 0.799127 |
Target: 5'- uGC-UCCgaGGCCGCAaguggacCGUGUCCCGc -3' miRNA: 3'- cCGuAGGa-CCGGUGUgu-----GCGCAGGGC- -5' |
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10698 | 5' | -59.1 | NC_002794.1 | + | 80749 | 0.67 | 0.807644 |
Target: 5'- cGGgGUCCgGGCCACGCGCuCGgacCUCu -3' miRNA: 3'- -CCgUAGGaCCGGUGUGUGcGCa--GGGc -5' |
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10698 | 5' | -59.1 | NC_002794.1 | + | 43738 | 0.67 | 0.807644 |
Target: 5'- cGGCcuUCUUGGCCAC-CugGgugcCGUUCCGc -3' miRNA: 3'- -CCGu-AGGACCGGUGuGugC----GCAGGGC- -5' |
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10698 | 5' | -59.1 | NC_002794.1 | + | 57569 | 0.67 | 0.811011 |
Target: 5'- cGcCAUCCUGGCCgACuucgagucacaggccGCGCGCGUggccaCCGa -3' miRNA: 3'- cC-GUAGGACCGG-UG---------------UGUGCGCAg----GGC- -5' |
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10698 | 5' | -59.1 | NC_002794.1 | + | 125940 | 0.67 | 0.816016 |
Target: 5'- aGCAguUCCUcguGGCCGCcuGCGCGCucGUCgCCGa -3' miRNA: 3'- cCGU--AGGA---CCGGUG--UGUGCG--CAG-GGC- -5' |
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10698 | 5' | -59.1 | NC_002794.1 | + | 40575 | 0.67 | 0.824234 |
Target: 5'- cGcCGUCCUGGCCGCGgGCccucuccuccgaGuCGUCgCCGg -3' miRNA: 3'- cC-GUAGGACCGGUGUgUG------------C-GCAG-GGC- -5' |
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10698 | 5' | -59.1 | NC_002794.1 | + | 117597 | 0.67 | 0.824234 |
Target: 5'- -------aGGCCugGCACGCGUCCa- -3' miRNA: 3'- ccguaggaCCGGugUGUGCGCAGGgc -5' |
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10698 | 5' | -59.1 | NC_002794.1 | + | 100574 | 0.67 | 0.824234 |
Target: 5'- cGGCA-CCUcuucacgcucgGGCCGUGCGCGCcGaUCCCGg -3' miRNA: 3'- -CCGUaGGA-----------CCGGUGUGUGCG-C-AGGGC- -5' |
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10698 | 5' | -59.1 | NC_002794.1 | + | 851 | 0.67 | 0.790472 |
Target: 5'- uGCGUUC-GGCCcaGCGCGCG-CCCGc -3' miRNA: 3'- cCGUAGGaCCGGugUGUGCGCaGGGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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