miRNA display CGI


Results 41 - 60 of 95 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10698 5' -59.1 NC_002794.1 + 100574 0.67 0.824234
Target:  5'- cGGCA-CCUcuucacgcucgGGCCGUGCGCGCcGaUCCCGg -3'
miRNA:   3'- -CCGUaGGA-----------CCGGUGUGUGCG-C-AGGGC- -5'
10698 5' -59.1 NC_002794.1 + 117597 0.67 0.824234
Target:  5'- -------aGGCCugGCACGCGUCCa- -3'
miRNA:   3'- ccguaggaCCGGugUGUGCGCAGGgc -5'
10698 5' -59.1 NC_002794.1 + 40575 0.67 0.824234
Target:  5'- cGcCGUCCUGGCCGCGgGCccucuccuccgaGuCGUCgCCGg -3'
miRNA:   3'- cC-GUAGGACCGGUGUgUG------------C-GCAG-GGC- -5'
10698 5' -59.1 NC_002794.1 + 125940 0.67 0.816016
Target:  5'- aGCAguUCCUcguGGCCGCcuGCGCGCucGUCgCCGa -3'
miRNA:   3'- cCGU--AGGA---CCGGUG--UGUGCG--CAG-GGC- -5'
10698 5' -59.1 NC_002794.1 + 57569 0.67 0.811011
Target:  5'- cGcCAUCCUGGCCgACuucgagucacaggccGCGCGCGUggccaCCGa -3'
miRNA:   3'- cC-GUAGGACCGG-UG---------------UGUGCGCAg----GGC- -5'
10698 5' -59.1 NC_002794.1 + 43738 0.67 0.807644
Target:  5'- cGGCcuUCUUGGCCAC-CugGgugcCGUUCCGc -3'
miRNA:   3'- -CCGu-AGGACCGGUGuGugC----GCAGGGC- -5'
10698 5' -59.1 NC_002794.1 + 80749 0.67 0.807644
Target:  5'- cGGgGUCCgGGCCACGCGCuCGgacCUCu -3'
miRNA:   3'- -CCgUAGGaCCGGUGUGUGcGCa--GGGc -5'
10698 5' -59.1 NC_002794.1 + 10987 0.67 0.799127
Target:  5'- uGC-UCCgaGGCCGCAaguggacCGUGUCCCGc -3'
miRNA:   3'- cCGuAGGa-CCGGUGUgu-----GCGCAGGGC- -5'
10698 5' -59.1 NC_002794.1 + 195111 0.68 0.726665
Target:  5'- cGGCGUCUcgUGcGCCcgcgGCGCGCGCGggCUCGc -3'
miRNA:   3'- -CCGUAGG--AC-CGG----UGUGUGCGCa-GGGC- -5'
10698 5' -59.1 NC_002794.1 + 194763 0.68 0.753702
Target:  5'- cGGCGacugcUCCgagaacGGCCgGCACGCGCGcagcggcUCCCa -3'
miRNA:   3'- -CCGU-----AGGa-----CCGG-UGUGUGCGC-------AGGGc -5'
10698 5' -59.1 NC_002794.1 + 53603 0.68 0.736069
Target:  5'- cGGCGUCaccgGGCCGC-CGCaGCGUCggaCGg -3'
miRNA:   3'- -CCGUAGga--CCGGUGuGUG-CGCAGg--GC- -5'
10698 5' -59.1 NC_002794.1 + 68926 0.68 0.754621
Target:  5'- cGGCGUCCUcgucgcccgcgGGCCGCGgCGCcgGCGccucUCCCu -3'
miRNA:   3'- -CCGUAGGA-----------CCGGUGU-GUG--CGC----AGGGc -5'
10698 5' -59.1 NC_002794.1 + 172407 0.68 0.754621
Target:  5'- aGUAUUCUGGCCAUccaGCGCGaCCUa -3'
miRNA:   3'- cCGUAGGACCGGUGug-UGCGCaGGGc -5'
10698 5' -59.1 NC_002794.1 + 113874 0.68 0.763752
Target:  5'- aGGCGcgCUcGGCCGCgGCGCGCGUCg-- -3'
miRNA:   3'- -CCGUa-GGaCCGGUG-UGUGCGCAGggc -5'
10698 5' -59.1 NC_002794.1 + 136006 0.68 0.754621
Target:  5'- gGGUccaGUCCgcUGGUCACuCGCGUGcCCCGu -3'
miRNA:   3'- -CCG---UAGG--ACCGGUGuGUGCGCaGGGC- -5'
10698 5' -59.1 NC_002794.1 + 54138 0.68 0.754621
Target:  5'- cGGCAcguUgUUGGCCA-GC-CGCGUCCCc -3'
miRNA:   3'- -CCGU---AgGACCGGUgUGuGCGCAGGGc -5'
10698 5' -59.1 NC_002794.1 + 71107 0.68 0.763752
Target:  5'- cGGCggCCUGGCCGgAgAgGCG-CUCGu -3'
miRNA:   3'- -CCGuaGGACCGGUgUgUgCGCaGGGC- -5'
10698 5' -59.1 NC_002794.1 + 1023 0.69 0.717186
Target:  5'- uGGCAUCC-GGcCCGCAcCACGCc-CCCu -3'
miRNA:   3'- -CCGUAGGaCC-GGUGU-GUGCGcaGGGc -5'
10698 5' -59.1 NC_002794.1 + 65367 0.69 0.707641
Target:  5'- cGGCGcCCUGacGCCACACG-GCGcCCCc -3'
miRNA:   3'- -CCGUaGGAC--CGGUGUGUgCGCaGGGc -5'
10698 5' -59.1 NC_002794.1 + 80336 0.69 0.688382
Target:  5'- gGGC-UCCUGaGCCucuGCGCguccaauaaGCGCGUCCgGg -3'
miRNA:   3'- -CCGuAGGAC-CGG---UGUG---------UGCGCAGGgC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.