miRNA display CGI


Results 61 - 80 of 95 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10698 5' -59.1 NC_002794.1 + 36589 0.67 0.799127
Target:  5'- aGGCgGUCCgcguGCCACACGaGCGccCCCGa -3'
miRNA:   3'- -CCG-UAGGac--CGGUGUGUgCGCa-GGGC- -5'
10698 5' -59.1 NC_002794.1 + 182025 0.67 0.790472
Target:  5'- cGGCGUCCgGGCCGCcgGCGaccagaccagGUCCUGc -3'
miRNA:   3'- -CCGUAGGaCCGGUGugUGCg---------CAGGGC- -5'
10698 5' -59.1 NC_002794.1 + 115935 0.67 0.790472
Target:  5'- cGGCGggCC-GGcCCGC-CGCGUGUCgCCGg -3'
miRNA:   3'- -CCGUa-GGaCC-GGUGuGUGCGCAG-GGC- -5'
10698 5' -59.1 NC_002794.1 + 103088 0.67 0.781686
Target:  5'- aGCGUCgC-GGcCCGCGCGCGCGgucacgacUCCCa -3'
miRNA:   3'- cCGUAG-GaCC-GGUGUGUGCGC--------AGGGc -5'
10698 5' -59.1 NC_002794.1 + 184460 0.67 0.789599
Target:  5'- uGCcgCCcgcgGGCCGCgcgaacgGCGCGCGgggcCCCGg -3'
miRNA:   3'- cCGuaGGa---CCGGUG-------UGUGCGCa---GGGC- -5'
10698 5' -59.1 NC_002794.1 + 106948 0.67 0.790472
Target:  5'- cGGCGgcgCCUGGagACACGCGuCGcCUCGc -3'
miRNA:   3'- -CCGUa--GGACCggUGUGUGC-GCaGGGC- -5'
10698 5' -59.1 NC_002794.1 + 34940 0.67 0.781686
Target:  5'- cGGCuGUCCccGGCC-CGC-CGCGaCCCGc -3'
miRNA:   3'- -CCG-UAGGa-CCGGuGUGuGCGCaGGGC- -5'
10698 5' -59.1 NC_002794.1 + 89580 0.67 0.781686
Target:  5'- cGGUGUCaucGGCCGuCGagcCGCGCGaUCCCGg -3'
miRNA:   3'- -CCGUAGga-CCGGU-GU---GUGCGC-AGGGC- -5'
10698 5' -59.1 NC_002794.1 + 60965 0.66 0.840183
Target:  5'- aGCG-CCgGGCCuACGCGCGCcUCCgGa -3'
miRNA:   3'- cCGUaGGaCCGG-UGUGUGCGcAGGgC- -5'
10698 5' -59.1 NC_002794.1 + 78681 0.66 0.840183
Target:  5'- cGGCcgCC-GGCCGCAUGUGCGg-CCGa -3'
miRNA:   3'- -CCGuaGGaCCGGUGUGUGCGCagGGC- -5'
10698 5' -59.1 NC_002794.1 + 93460 0.66 0.855439
Target:  5'- cGGCGUCCc-GCCGcCGCACGUGgCCa- -3'
miRNA:   3'- -CCGUAGGacCGGU-GUGUGCGCaGGgc -5'
10698 5' -59.1 NC_002794.1 + 182996 0.66 0.855439
Target:  5'- cGGCGcuucgCCgcggGcGCCcCGCGCGCG-CCCGc -3'
miRNA:   3'- -CCGUa----GGa---C-CGGuGUGUGCGCaGGGC- -5'
10698 5' -59.1 NC_002794.1 + 102418 0.66 0.862793
Target:  5'- cGGCcguggCCgaGGCCGC-CACGCGcaugUCCGa -3'
miRNA:   3'- -CCGua---GGa-CCGGUGuGUGCGCa---GGGC- -5'
10698 5' -59.1 NC_002794.1 + 138296 0.66 0.840183
Target:  5'- uGGCggCCuUGGCC-CGCACGCuGUCg-- -3'
miRNA:   3'- -CCGuaGG-ACCGGuGUGUGCG-CAGggc -5'
10698 5' -59.1 NC_002794.1 + 85563 0.66 0.840183
Target:  5'- cGGCuUCCU-GCCACGCGCGaccaauCGgggccCCCGg -3'
miRNA:   3'- -CCGuAGGAcCGGUGUGUGC------GCa----GGGC- -5'
10698 5' -59.1 NC_002794.1 + 49744 0.66 0.832292
Target:  5'- uGGCGagcCCguaGGCCGCucGCACGCG-CUCGu -3'
miRNA:   3'- -CCGUa--GGa--CCGGUG--UGUGCGCaGGGC- -5'
10698 5' -59.1 NC_002794.1 + 36353 0.66 0.832292
Target:  5'- cGGCGUgCgcGGCCACcgggUGCGCG-CCCGc -3'
miRNA:   3'- -CCGUAgGa-CCGGUGu---GUGCGCaGGGC- -5'
10698 5' -59.1 NC_002794.1 + 30068 0.66 0.832292
Target:  5'- cGGgGUCC-GGUCGCccggucgacgagGCGCGCGgccggUCCCGa -3'
miRNA:   3'- -CCgUAGGaCCGGUG------------UGUGCGC-----AGGGC- -5'
10698 5' -59.1 NC_002794.1 + 23711 0.66 0.832292
Target:  5'- aGCGUCCcgaaCCGCGCGCGgCGggCCCGa -3'
miRNA:   3'- cCGUAGGacc-GGUGUGUGC-GCa-GGGC- -5'
10698 5' -59.1 NC_002794.1 + 101971 0.66 0.830694
Target:  5'- cGGCGUCCaucaccacgaucGGCCGCgACAUGC-UCUCGc -3'
miRNA:   3'- -CCGUAGGa-----------CCGGUG-UGUGCGcAGGGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.