miRNA display CGI


Results 41 - 60 of 95 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10698 5' -59.1 NC_002794.1 + 194763 0.68 0.753702
Target:  5'- cGGCGacugcUCCgagaacGGCCgGCACGCGCGcagcggcUCCCa -3'
miRNA:   3'- -CCGU-----AGGa-----CCGG-UGUGUGCGC-------AGGGc -5'
10698 5' -59.1 NC_002794.1 + 68926 0.68 0.754621
Target:  5'- cGGCGUCCUcgucgcccgcgGGCCGCGgCGCcgGCGccucUCCCu -3'
miRNA:   3'- -CCGUAGGA-----------CCGGUGU-GUG--CGC----AGGGc -5'
10698 5' -59.1 NC_002794.1 + 172407 0.68 0.754621
Target:  5'- aGUAUUCUGGCCAUccaGCGCGaCCUa -3'
miRNA:   3'- cCGUAGGACCGGUGug-UGCGCaGGGc -5'
10698 5' -59.1 NC_002794.1 + 136006 0.68 0.754621
Target:  5'- gGGUccaGUCCgcUGGUCACuCGCGUGcCCCGu -3'
miRNA:   3'- -CCG---UAGG--ACCGGUGuGUGCGCaGGGC- -5'
10698 5' -59.1 NC_002794.1 + 54138 0.68 0.754621
Target:  5'- cGGCAcguUgUUGGCCA-GC-CGCGUCCCc -3'
miRNA:   3'- -CCGU---AgGACCGGUgUGuGCGCAGGGc -5'
10698 5' -59.1 NC_002794.1 + 71107 0.68 0.763752
Target:  5'- cGGCggCCUGGCCGgAgAgGCG-CUCGu -3'
miRNA:   3'- -CCGuaGGACCGGUgUgUgCGCaGGGC- -5'
10698 5' -59.1 NC_002794.1 + 113874 0.68 0.763752
Target:  5'- aGGCGcgCUcGGCCGCgGCGCGCGUCg-- -3'
miRNA:   3'- -CCGUa-GGaCCGGUG-UGUGCGCAGggc -5'
10698 5' -59.1 NC_002794.1 + 99535 0.67 0.7808
Target:  5'- cGUAUCUgugcgGGCCGCggaaaccGCGCGCG-CCCu -3'
miRNA:   3'- cCGUAGGa----CCGGUG-------UGUGCGCaGGGc -5'
10698 5' -59.1 NC_002794.1 + 34940 0.67 0.781686
Target:  5'- cGGCuGUCCccGGCC-CGC-CGCGaCCCGc -3'
miRNA:   3'- -CCG-UAGGa-CCGGuGUGuGCGCaGGGC- -5'
10698 5' -59.1 NC_002794.1 + 89580 0.67 0.781686
Target:  5'- cGGUGUCaucGGCCGuCGagcCGCGCGaUCCCGg -3'
miRNA:   3'- -CCGUAGga-CCGGU-GU---GUGCGC-AGGGC- -5'
10698 5' -59.1 NC_002794.1 + 103088 0.67 0.781686
Target:  5'- aGCGUCgC-GGcCCGCGCGCGCGgucacgacUCCCa -3'
miRNA:   3'- cCGUAG-GaCC-GGUGUGUGCGC--------AGGGc -5'
10698 5' -59.1 NC_002794.1 + 184460 0.67 0.789599
Target:  5'- uGCcgCCcgcgGGCCGCgcgaacgGCGCGCGgggcCCCGg -3'
miRNA:   3'- cCGuaGGa---CCGGUG-------UGUGCGCa---GGGC- -5'
10698 5' -59.1 NC_002794.1 + 115935 0.67 0.790472
Target:  5'- cGGCGggCC-GGcCCGC-CGCGUGUCgCCGg -3'
miRNA:   3'- -CCGUa-GGaCC-GGUGuGUGCGCAG-GGC- -5'
10698 5' -59.1 NC_002794.1 + 851 0.67 0.790472
Target:  5'- uGCGUUC-GGCCcaGCGCGCG-CCCGc -3'
miRNA:   3'- cCGUAGGaCCGGugUGUGCGCaGGGC- -5'
10698 5' -59.1 NC_002794.1 + 106948 0.67 0.790472
Target:  5'- cGGCGgcgCCUGGagACACGCGuCGcCUCGc -3'
miRNA:   3'- -CCGUa--GGACCggUGUGUGC-GCaGGGC- -5'
10698 5' -59.1 NC_002794.1 + 182025 0.67 0.790472
Target:  5'- cGGCGUCCgGGCCGCcgGCGaccagaccagGUCCUGc -3'
miRNA:   3'- -CCGUAGGaCCGGUGugUGCg---------CAGGGC- -5'
10698 5' -59.1 NC_002794.1 + 36589 0.67 0.799127
Target:  5'- aGGCgGUCCgcguGCCACACGaGCGccCCCGa -3'
miRNA:   3'- -CCG-UAGGac--CGGUGUGUgCGCa-GGGC- -5'
10698 5' -59.1 NC_002794.1 + 37045 0.67 0.799127
Target:  5'- gGGUGUCCUGcCCGuCGCGCuCGUCCuCGu -3'
miRNA:   3'- -CCGUAGGACcGGU-GUGUGcGCAGG-GC- -5'
10698 5' -59.1 NC_002794.1 + 12653 0.67 0.799127
Target:  5'- gGGUA-CCgcaccGCCACGCugGUGaUCCCGc -3'
miRNA:   3'- -CCGUaGGac---CGGUGUGugCGC-AGGGC- -5'
10698 5' -59.1 NC_002794.1 + 10987 0.67 0.799127
Target:  5'- uGC-UCCgaGGCCGCAaguggacCGUGUCCCGc -3'
miRNA:   3'- cCGuAGGa-CCGGUGUgu-----GCGCAGGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.