miRNA display CGI


Results 61 - 80 of 95 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10698 5' -59.1 NC_002794.1 + 36263 0.69 0.688382
Target:  5'- uGGCGUCgUGua-ACGC-CGCGUCCCGc -3'
miRNA:   3'- -CCGUAGgACcggUGUGuGCGCAGGGC- -5'
10698 5' -59.1 NC_002794.1 + 80336 0.69 0.688382
Target:  5'- gGGC-UCCUGaGCCucuGCGCguccaauaaGCGCGUCCgGg -3'
miRNA:   3'- -CCGuAGGAC-CGG---UGUG---------UGCGCAGGgC- -5'
10698 5' -59.1 NC_002794.1 + 118283 0.69 0.678684
Target:  5'- cGGCGUCggGGaCCGCGCcggGCGCGUCgCu -3'
miRNA:   3'- -CCGUAGgaCC-GGUGUG---UGCGCAGgGc -5'
10698 5' -59.1 NC_002794.1 + 60647 0.69 0.678684
Target:  5'- cGGCGgcgCC-GGCCACccgGCGCGCGcCgCCGc -3'
miRNA:   3'- -CCGUa--GGaCCGGUG---UGUGCGCaG-GGC- -5'
10698 5' -59.1 NC_002794.1 + 46881 0.69 0.668952
Target:  5'- uGCcgGUCCUGGCCA-AC-CGCGUCgCGa -3'
miRNA:   3'- cCG--UAGGACCGGUgUGuGCGCAGgGC- -5'
10698 5' -59.1 NC_002794.1 + 93696 0.69 0.668952
Target:  5'- -uCGUCCUGGCCACGCGCcugguCGaCCUGc -3'
miRNA:   3'- ccGUAGGACCGGUGUGUGc----GCaGGGC- -5'
10698 5' -59.1 NC_002794.1 + 69246 0.69 0.668952
Target:  5'- cGCGaCCUGGCC-CGCuCGCGcuccguacguUCCCGg -3'
miRNA:   3'- cCGUaGGACCGGuGUGuGCGC----------AGGGC- -5'
10698 5' -59.1 NC_002794.1 + 93782 0.7 0.659191
Target:  5'- cGCGUgCUGGCgGCGCuCGaGUCCCa -3'
miRNA:   3'- cCGUAgGACCGgUGUGuGCgCAGGGc -5'
10698 5' -59.1 NC_002794.1 + 90452 0.7 0.659191
Target:  5'- aGGCGagCUuuucggcgaGGCCGCGCGCGgcggggccgcCGUCCCGc -3'
miRNA:   3'- -CCGUagGA---------CCGGUGUGUGC----------GCAGGGC- -5'
10698 5' -59.1 NC_002794.1 + 14197 0.7 0.659191
Target:  5'- aGCGUCCcGGCC-CGCugGcCGcCCCa -3'
miRNA:   3'- cCGUAGGaCCGGuGUGugC-GCaGGGc -5'
10698 5' -59.1 NC_002794.1 + 57422 0.7 0.659191
Target:  5'- cGGCGUgCUGGUCgGCACG-GCG-CCCGu -3'
miRNA:   3'- -CCGUAgGACCGG-UGUGUgCGCaGGGC- -5'
10698 5' -59.1 NC_002794.1 + 190744 0.7 0.639619
Target:  5'- cGCcgCCgucucgacgggGGCgGCGgcCGCGCGUCCCGg -3'
miRNA:   3'- cCGuaGGa----------CCGgUGU--GUGCGCAGGGC- -5'
10698 5' -59.1 NC_002794.1 + 37548 0.7 0.639619
Target:  5'- aGCcgCCggaggGGCCACgAC-CGCGUCuCCGa -3'
miRNA:   3'- cCGuaGGa----CCGGUG-UGuGCGCAG-GGC- -5'
10698 5' -59.1 NC_002794.1 + 33317 0.7 0.639619
Target:  5'- cGGCGUCCauccGCCACACGCuGCaGUCgCUGg -3'
miRNA:   3'- -CCGUAGGac--CGGUGUGUG-CG-CAG-GGC- -5'
10698 5' -59.1 NC_002794.1 + 633 0.7 0.633741
Target:  5'- uGGCGUUCgccucccguccccGCCGCGCAgCGCGUCUCGc -3'
miRNA:   3'- -CCGUAGGac-----------CGGUGUGU-GCGCAGGGC- -5'
10698 5' -59.1 NC_002794.1 + 80504 0.7 0.629822
Target:  5'- cGGCAcgucUUCUGcGCCGCgGCGCGCGacgCCUGg -3'
miRNA:   3'- -CCGU----AGGAC-CGGUG-UGUGCGCa--GGGC- -5'
10698 5' -59.1 NC_002794.1 + 38190 0.7 0.620025
Target:  5'- aGGCGuUCCUGGUCucgucguuCGCGCGCGcgaCCGa -3'
miRNA:   3'- -CCGU-AGGACCGGu-------GUGUGCGCag-GGC- -5'
10698 5' -59.1 NC_002794.1 + 82990 0.7 0.610237
Target:  5'- cGCugaaCCUGGCgC-CGCACGCG-CCCGa -3'
miRNA:   3'- cCGua--GGACCG-GuGUGUGCGCaGGGC- -5'
10698 5' -59.1 NC_002794.1 + 147855 0.7 0.610237
Target:  5'- uGCAUCCUGGgCGuCGuCGCGCaGUCCuCGg -3'
miRNA:   3'- cCGUAGGACCgGU-GU-GUGCG-CAGG-GC- -5'
10698 5' -59.1 NC_002794.1 + 35728 0.7 0.610237
Target:  5'- uGGCcUCC-GGCgGC-CGCGCGUCUCa -3'
miRNA:   3'- -CCGuAGGaCCGgUGuGUGCGCAGGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.