miRNA display CGI


Results 41 - 60 of 95 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10698 5' -59.1 NC_002794.1 + 68926 0.68 0.754621
Target:  5'- cGGCGUCCUcgucgcccgcgGGCCGCGgCGCcgGCGccucUCCCu -3'
miRNA:   3'- -CCGUAGGA-----------CCGGUGU-GUG--CGC----AGGGc -5'
10698 5' -59.1 NC_002794.1 + 69246 0.69 0.668952
Target:  5'- cGCGaCCUGGCC-CGCuCGCGcuccguacguUCCCGg -3'
miRNA:   3'- cCGUaGGACCGGuGUGuGCGC----------AGGGC- -5'
10698 5' -59.1 NC_002794.1 + 71107 0.68 0.763752
Target:  5'- cGGCggCCUGGCCGgAgAgGCG-CUCGu -3'
miRNA:   3'- -CCGuaGGACCGGUgUgUgCGCaGGGC- -5'
10698 5' -59.1 NC_002794.1 + 78681 0.66 0.840183
Target:  5'- cGGCcgCC-GGCCGCAUGUGCGg-CCGa -3'
miRNA:   3'- -CCGuaGGaCCGGUGUGUGCGCagGGC- -5'
10698 5' -59.1 NC_002794.1 + 80336 0.69 0.688382
Target:  5'- gGGC-UCCUGaGCCucuGCGCguccaauaaGCGCGUCCgGg -3'
miRNA:   3'- -CCGuAGGAC-CGG---UGUG---------UGCGCAGGgC- -5'
10698 5' -59.1 NC_002794.1 + 80504 0.7 0.629822
Target:  5'- cGGCAcgucUUCUGcGCCGCgGCGCGCGacgCCUGg -3'
miRNA:   3'- -CCGU----AGGAC-CGGUG-UGUGCGCa--GGGC- -5'
10698 5' -59.1 NC_002794.1 + 80749 0.67 0.807644
Target:  5'- cGGgGUCCgGGCCACGCGCuCGgacCUCu -3'
miRNA:   3'- -CCgUAGGaCCGGUGUGUGcGCa--GGGc -5'
10698 5' -59.1 NC_002794.1 + 82990 0.7 0.610237
Target:  5'- cGCugaaCCUGGCgC-CGCACGCG-CCCGa -3'
miRNA:   3'- cCGua--GGACCG-GuGUGUGCGCaGGGC- -5'
10698 5' -59.1 NC_002794.1 + 85563 0.66 0.840183
Target:  5'- cGGCuUCCU-GCCACGCGCGaccaauCGgggccCCCGg -3'
miRNA:   3'- -CCGuAGGAcCGGUGUGUGC------GCa----GGGC- -5'
10698 5' -59.1 NC_002794.1 + 89580 0.67 0.781686
Target:  5'- cGGUGUCaucGGCCGuCGagcCGCGCGaUCCCGg -3'
miRNA:   3'- -CCGUAGga-CCGGU-GU---GUGCGC-AGGGC- -5'
10698 5' -59.1 NC_002794.1 + 90452 0.7 0.659191
Target:  5'- aGGCGagCUuuucggcgaGGCCGCGCGCGgcggggccgcCGUCCCGc -3'
miRNA:   3'- -CCGUagGA---------CCGGUGUGUGC----------GCAGGGC- -5'
10698 5' -59.1 NC_002794.1 + 93460 0.66 0.855439
Target:  5'- cGGCGUCCc-GCCGcCGCACGUGgCCa- -3'
miRNA:   3'- -CCGUAGGacCGGU-GUGUGCGCaGGgc -5'
10698 5' -59.1 NC_002794.1 + 93696 0.69 0.668952
Target:  5'- -uCGUCCUGGCCACGCGCcugguCGaCCUGc -3'
miRNA:   3'- ccGUAGGACCGGUGUGUGc----GCaGGGC- -5'
10698 5' -59.1 NC_002794.1 + 93782 0.7 0.659191
Target:  5'- cGCGUgCUGGCgGCGCuCGaGUCCCa -3'
miRNA:   3'- cCGUAgGACCGgUGUGuGCgCAGGGc -5'
10698 5' -59.1 NC_002794.1 + 99535 0.67 0.7808
Target:  5'- cGUAUCUgugcgGGCCGCggaaaccGCGCGCG-CCCu -3'
miRNA:   3'- cCGUAGGa----CCGGUG-------UGUGCGCaGGGc -5'
10698 5' -59.1 NC_002794.1 + 100574 0.67 0.824234
Target:  5'- cGGCA-CCUcuucacgcucgGGCCGUGCGCGCcGaUCCCGg -3'
miRNA:   3'- -CCGUaGGA-----------CCGGUGUGUGCG-C-AGGGC- -5'
10698 5' -59.1 NC_002794.1 + 101971 0.66 0.830694
Target:  5'- cGGCGUCCaucaccacgaucGGCCGCgACAUGC-UCUCGc -3'
miRNA:   3'- -CCGUAGGa-----------CCGGUG-UGUGCGcAGGGC- -5'
10698 5' -59.1 NC_002794.1 + 102418 0.66 0.862793
Target:  5'- cGGCcguggCCgaGGCCGC-CACGCGcaugUCCGa -3'
miRNA:   3'- -CCGua---GGa-CCGGUGuGUGCGCa---GGGC- -5'
10698 5' -59.1 NC_002794.1 + 103088 0.67 0.781686
Target:  5'- aGCGUCgC-GGcCCGCGCGCGCGgucacgacUCCCa -3'
miRNA:   3'- cCGUAG-GaCC-GGUGUGUGCGC--------AGGGc -5'
10698 5' -59.1 NC_002794.1 + 106948 0.67 0.790472
Target:  5'- cGGCGgcgCCUGGagACACGCGuCGcCUCGc -3'
miRNA:   3'- -CCGUa--GGACCggUGUGUGC-GCaGGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.