miRNA display CGI


Results 81 - 95 of 95 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10698 5' -59.1 NC_002794.1 + 146002 0.73 0.468414
Target:  5'- cGGCcgCCggGGCCGgAgACGCcGUCCCa -3'
miRNA:   3'- -CCGuaGGa-CCGGUgUgUGCG-CAGGGc -5'
10698 5' -59.1 NC_002794.1 + 147855 0.7 0.610237
Target:  5'- uGCAUCCUGGgCGuCGuCGCGCaGUCCuCGg -3'
miRNA:   3'- cCGUAGGACCgGU-GU-GUGCG-CAGG-GC- -5'
10698 5' -59.1 NC_002794.1 + 153662 0.66 0.835469
Target:  5'- cGCGUCC-GGCCGCcgguugugaggcucgACGCGCGaCCgGc -3'
miRNA:   3'- cCGUAGGaCCGGUG---------------UGUGCGCaGGgC- -5'
10698 5' -59.1 NC_002794.1 + 172407 0.68 0.754621
Target:  5'- aGUAUUCUGGCCAUccaGCGCGaCCUa -3'
miRNA:   3'- cCGUAGGACCGGUGug-UGCGCaGGGc -5'
10698 5' -59.1 NC_002794.1 + 180608 0.66 0.832292
Target:  5'- cGCG-CCgcgGGCCACgACACGgCGgCCCa -3'
miRNA:   3'- cCGUaGGa--CCGGUG-UGUGC-GCaGGGc -5'
10698 5' -59.1 NC_002794.1 + 182025 0.67 0.790472
Target:  5'- cGGCGUCCgGGCCGCcgGCGaccagaccagGUCCUGc -3'
miRNA:   3'- -CCGUAGGaCCGGUGugUGCg---------CAGGGC- -5'
10698 5' -59.1 NC_002794.1 + 182996 0.66 0.855439
Target:  5'- cGGCGcuucgCCgcggGcGCCcCGCGCGCG-CCCGc -3'
miRNA:   3'- -CCGUa----GGa---C-CGGuGUGUGCGCaGGGC- -5'
10698 5' -59.1 NC_002794.1 + 184460 0.67 0.789599
Target:  5'- uGCcgCCcgcgGGCCGCgcgaacgGCGCGCGgggcCCCGg -3'
miRNA:   3'- cCGuaGGa---CCGGUG-------UGUGCGCa---GGGC- -5'
10698 5' -59.1 NC_002794.1 + 185753 0.66 0.855439
Target:  5'- cGCGUCCa-GCCGCcgGCGCGgccgCCCGu -3'
miRNA:   3'- cCGUAGGacCGGUGugUGCGCa---GGGC- -5'
10698 5' -59.1 NC_002794.1 + 187254 0.75 0.345426
Target:  5'- cGGCugaaGUCCU-GCCGCuCGCGCGUCUCGa -3'
miRNA:   3'- -CCG----UAGGAcCGGUGuGUGCGCAGGGC- -5'
10698 5' -59.1 NC_002794.1 + 190744 0.7 0.639619
Target:  5'- cGCcgCCgucucgacgggGGCgGCGgcCGCGCGUCCCGg -3'
miRNA:   3'- cCGuaGGa----------CCGgUGU--GUGCGCAGGGC- -5'
10698 5' -59.1 NC_002794.1 + 193307 0.66 0.832292
Target:  5'- cGC-UCC-GcGCCGCACGCaGCG-CCCGa -3'
miRNA:   3'- cCGuAGGaC-CGGUGUGUG-CGCaGGGC- -5'
10698 5' -59.1 NC_002794.1 + 194763 0.68 0.753702
Target:  5'- cGGCGacugcUCCgagaacGGCCgGCACGCGCGcagcggcUCCCa -3'
miRNA:   3'- -CCGU-----AGGa-----CCGG-UGUGUGCGC-------AGGGc -5'
10698 5' -59.1 NC_002794.1 + 195111 0.68 0.726665
Target:  5'- cGGCGUCUcgUGcGCCcgcgGCGCGCGCGggCUCGc -3'
miRNA:   3'- -CCGUAGG--AC-CGG----UGUGUGCGCa-GGGC- -5'
10698 5' -59.1 NC_002794.1 + 195402 1.11 0.001576
Target:  5'- cGGCAUCCUGGCCACACACGCGUCCCGa -3'
miRNA:   3'- -CCGUAGGACCGGUGUGUGCGCAGGGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.