Results 81 - 95 of 95 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
10698 | 5' | -59.1 | NC_002794.1 | + | 106948 | 0.67 | 0.790472 |
Target: 5'- cGGCGgcgCCUGGagACACGCGuCGcCUCGc -3' miRNA: 3'- -CCGUa--GGACCggUGUGUGC-GCaGGGC- -5' |
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10698 | 5' | -59.1 | NC_002794.1 | + | 34940 | 0.67 | 0.781686 |
Target: 5'- cGGCuGUCCccGGCC-CGC-CGCGaCCCGc -3' miRNA: 3'- -CCG-UAGGa-CCGGuGUGuGCGCaGGGC- -5' |
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10698 | 5' | -59.1 | NC_002794.1 | + | 12653 | 0.67 | 0.799127 |
Target: 5'- gGGUA-CCgcaccGCCACGCugGUGaUCCCGc -3' miRNA: 3'- -CCGUaGGac---CGGUGUGugCGC-AGGGC- -5' |
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10698 | 5' | -59.1 | NC_002794.1 | + | 10987 | 0.67 | 0.799127 |
Target: 5'- uGC-UCCgaGGCCGCAaguggacCGUGUCCCGc -3' miRNA: 3'- cCGuAGGa-CCGGUGUgu-----GCGCAGGGC- -5' |
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10698 | 5' | -59.1 | NC_002794.1 | + | 80749 | 0.67 | 0.807644 |
Target: 5'- cGGgGUCCgGGCCACGCGCuCGgacCUCu -3' miRNA: 3'- -CCgUAGGaCCGGUGUGUGcGCa--GGGc -5' |
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10698 | 5' | -59.1 | NC_002794.1 | + | 23711 | 0.66 | 0.832292 |
Target: 5'- aGCGUCCcgaaCCGCGCGCGgCGggCCCGa -3' miRNA: 3'- cCGUAGGacc-GGUGUGUGC-GCa-GGGC- -5' |
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10698 | 5' | -59.1 | NC_002794.1 | + | 130553 | 0.67 | 0.824234 |
Target: 5'- cGGCGUC---GCCGCGCACGUguuggcgagGUCUCGa -3' miRNA: 3'- -CCGUAGgacCGGUGUGUGCG---------CAGGGC- -5' |
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10698 | 5' | -59.1 | NC_002794.1 | + | 101971 | 0.66 | 0.830694 |
Target: 5'- cGGCGUCCaucaccacgaucGGCCGCgACAUGC-UCUCGc -3' miRNA: 3'- -CCGUAGGa-----------CCGGUG-UGUGCGcAGGGC- -5' |
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10698 | 5' | -59.1 | NC_002794.1 | + | 100574 | 0.67 | 0.824234 |
Target: 5'- cGGCA-CCUcuucacgcucgGGCCGUGCGCGCcGaUCCCGg -3' miRNA: 3'- -CCGUaGGA-----------CCGGUGUGUGCG-C-AGGGC- -5' |
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10698 | 5' | -59.1 | NC_002794.1 | + | 117597 | 0.67 | 0.824234 |
Target: 5'- -------aGGCCugGCACGCGUCCa- -3' miRNA: 3'- ccguaggaCCGGugUGUGCGCAGGgc -5' |
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10698 | 5' | -59.1 | NC_002794.1 | + | 40575 | 0.67 | 0.824234 |
Target: 5'- cGcCGUCCUGGCCGCGgGCccucuccuccgaGuCGUCgCCGg -3' miRNA: 3'- cC-GUAGGACCGGUGUgUG------------C-GCAG-GGC- -5' |
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10698 | 5' | -59.1 | NC_002794.1 | + | 125940 | 0.67 | 0.816016 |
Target: 5'- aGCAguUCCUcguGGCCGCcuGCGCGCucGUCgCCGa -3' miRNA: 3'- cCGU--AGGA---CCGGUG--UGUGCG--CAG-GGC- -5' |
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10698 | 5' | -59.1 | NC_002794.1 | + | 57569 | 0.67 | 0.811011 |
Target: 5'- cGcCAUCCUGGCCgACuucgagucacaggccGCGCGCGUggccaCCGa -3' miRNA: 3'- cC-GUAGGACCGG-UG---------------UGUGCGCAg----GGC- -5' |
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10698 | 5' | -59.1 | NC_002794.1 | + | 43738 | 0.67 | 0.807644 |
Target: 5'- cGGCcuUCUUGGCCAC-CugGgugcCGUUCCGc -3' miRNA: 3'- -CCGu-AGGACCGGUGuGugC----GCAGGGC- -5' |
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10698 | 5' | -59.1 | NC_002794.1 | + | 89580 | 0.67 | 0.781686 |
Target: 5'- cGGUGUCaucGGCCGuCGagcCGCGCGaUCCCGg -3' miRNA: 3'- -CCGUAGga-CCGGU-GU---GUGCGC-AGGGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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